Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
|
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G490800.1 | Wheat | cytosol | 80.3 | 81.54 |
| TraesCS3A01G472700.1 | Wheat | cytosol | 40.15 | 75.71 |
| TraesCS2D01G467800.1 | Wheat | cytosol | 80.3 | 75.71 |
| TraesCS2A01G467800.1 | Wheat | nucleus | 79.55 | 75.0 |
| TraesCS1A01G083600.1 | Wheat | cytosol | 37.12 | 73.13 |
| TraesCS7B01G031200.1 | Wheat | cytosol | 38.64 | 72.86 |
| TraesCS7A01G549600.1 | Wheat | cytosol, plastid | 38.64 | 72.86 |
| TraesCS3D01G128100.1 | Wheat | cytosol | 38.64 | 72.86 |
| TraesCS3A01G092500.1 | Wheat | cytosol, plastid | 38.64 | 72.86 |
| TraesCS1A01G132700.1 | Wheat | cytosol, plastid | 37.88 | 71.43 |
| TraesCS1A01G199800.1 | Wheat | cytosol, plastid | 37.88 | 71.43 |
| TraesCS3A01G307400.1 | Wheat | cytosol | 37.88 | 71.43 |
| TraesCS4A01G371300.1 | Wheat | cytosol | 37.88 | 71.43 |
| TraesCS7D01G219900.1 | Wheat | cytosol | 37.88 | 71.43 |
| Zm00001d002259_P002 | Maize | cytosol | 75.0 | 71.22 |
| GSMUA_Achr11P... | Banana | cytosol | 59.85 | 66.95 |
| KRH40004 | Soybean | cytosol | 57.58 | 63.33 |
| AT2G43640.1 | Thale cress | cytosol | 56.82 | 61.98 |
| Bra037694.1-P | Field mustard | cytosol | 56.82 | 61.48 |
| PGSC0003DMT400042031 | Potato | cytosol | 56.06 | 59.2 |
| CDY30427 | Canola | cytosol | 47.73 | 58.88 |
| VIT_05s0094g00400.t01 | Wine grape | cytosol | 45.45 | 56.6 |
| CDY30425 | Canola | cytosol | 46.21 | 56.48 |
| Bra037696.1-P | Field mustard | cytosol | 46.21 | 56.48 |
| CDY44245 | Canola | cytosol | 46.21 | 55.96 |
| Bra000316.1-P | Field mustard | cytosol | 46.21 | 55.96 |
| CDX83471 | Canola | cytosol | 45.45 | 55.05 |
| CDY23384 | Canola | cytosol | 43.94 | 53.7 |
| OQU82368 | Sorghum | plastid | 77.27 | 51.0 |
| KRH23789 | Soybean | cytosol | 42.42 | 43.41 |
| CDY69452 | Canola | cytosol | 54.55 | 40.22 |
| KRH33974 | Soybean | cytosol, endoplasmic reticulum, nucleus | 19.7 | 39.39 |
| TraesCS3A01G166400.2 | Wheat | cytosol | 40.91 | 26.09 |
| CDX79810 | Canola | cytosol | 56.06 | 24.42 |
| Bra004775.1-P | Field mustard | cytosol | 56.06 | 24.42 |
Protein Annotations
| MapMan:23.3.1.1.4 | Gene3D:3.30.720.10 | EntrezGene:4337050 | ProteinID:BAF15841.1 | ProteinID:BAS91088.1 | ProteinID:CAE03502.2 |
| ProteinID:EEE61718.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | GO:GO:0045047 | GO:GO:0048500 | InterPro:IPR009018 |
| UniProt:O04433 | EnsemblPlantsGene:Os04g0623700 | EnsemblPlants:Os04t0623700-01 | PFAM:PD009170 | PFAM:PF02290 | PANTHER:PTHR12013 |
| SUPFAM:SSF54762 | InterPro:Signal_recog_particle_SRP14 | InterPro:Signal_recog_particle_SRP9/14 | UniParc:UPI0000135EB3 | RefSeq:XP_015635504.1 | EMBL:Y10118 |
| SEG:seg | : | : | : | : | : |
Description
SRP14Similar to Signal recognition particle 14 kDa protein (SRP14). (Os04t0623700-01)
Coordinates
chr4:+:31697288..31700055
Molecular Weight (calculated)
14839.3 Da
IEP (calculated)
10.773
GRAVY (calculated)
-0.777
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVLQPDPFL SELTSMYERS TEKGSVWVTM KRSSMKCQAR LKKMAAKGEA VEYRCLVRAT DGKKNICTAL SAKEYLKFQA SYATVLKAHM HALKKRERKD
101: KKKAAEVEKI PEKAPKKQKK APSSKKSAGS KS
101: KKKAAEVEKI PEKAPKKQKK APSSKKSAGS KS
001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L
101: RKKSTEAEKK ESTSTTKSKK L
Arabidopsis Description
SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.