CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40004	Soybean	cytosol	71.21	39.17
KRH23789	Soybean	cytosol	69.7	35.66
CDY30427	Canola	cytosol	56.06	34.58
VIT_05s0094g00400.t01	Wine grape	cytosol	54.55	33.96
Bra037696.1-P	Field mustard	cytosol	54.55	33.33
CDY30425	Canola	cytosol	54.55	33.33
CDY44245	Canola	cytosol	54.55	33.03
CDY23384	Canola	cytosol	53.03	32.41
Bra000316.1-P	Field mustard	cytosol	53.03	32.11
CDX83471	Canola	cytosol	53.03	32.11
Bra037694.1-P	Field mustard	cytosol	56.06	30.33
AT2G43640.1	Thale cress	cytosol	53.03	28.93
PGSC0003DMT400042031	Potato	cytosol	48.48	25.6
GSMUA_Achr11P...	Banana	cytosol	45.45	25.42
Zm00001d002259_P002	Maize	cytosol	45.45	21.58
CDY69452	Canola	cytosol	56.06	20.67
Os04t0623700-01	Rice	nucleus	39.39	19.7
TraesCS2B01G490800.1	Wheat	cytosol	37.88	19.23
TraesCS2D01G467800.1	Wheat	cytosol	37.88	17.86
TraesCS2A01G467800.1	Wheat	nucleus	37.88	17.86
OQU82368	Sorghum	plastid	42.42	14.0
CDX79810	Canola	cytosol	54.55	11.88
Bra004775.1-P	Field mustard	cytosol	54.55	11.88
TraesCS3A01G166400.2	Wheat	cytosol	7.58	2.42
TraesCS1A01G199800.1	Wheat	cytosol, plastid	1.52	1.43
TraesCS3A01G092500.1	Wheat	cytosol, plastid	1.52	1.43
TraesCS3A01G307400.1	Wheat	cytosol	1.52	1.43
TraesCS3A01G472700.1	Wheat	cytosol	1.52	1.43
TraesCS3D01G128100.1	Wheat	cytosol	1.52	1.43
TraesCS4A01G371300.1	Wheat	cytosol	1.52	1.43
TraesCS7A01G549600.1	Wheat	cytosol, plastid	1.52	1.43
TraesCS7B01G031200.1	Wheat	cytosol	1.52	1.43
TraesCS7D01G219900.1	Wheat	cytosol	1.52	1.43
TraesCS1A01G132700.1	Wheat	cytosol, plastid	1.52	1.43
TraesCS1A01G083600.1	Wheat	cytosol	0.0	0.0

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	UniProt:A0A0R0HU80	EMBL:ACUP02006567	EnsemblPlantsGene:GLYMA_10G156400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0048500
InterPro:IPR009018	EnsemblPlants:KRH33974	ProteinID:KRH33974	ProteinID:KRH33974.1	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0006ED834B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:39057169..39059467

Molecular Weight (calculated)

7777.7 Da

IEP (calculated)

11.403

GRAVY (calculated)

-0.776

Length

66 amino acids

Sequence
(BLAST)

1: MVGPKDHQRF QASYATILKA HMTAIKKRER KDKKKPAKAD KREGSSKRLK RFWLVLFSLV FLSQMD

Best Arabidopsis Sequence Match ( AT2G43640.3 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKASLKSKV QKRKLSSVGE SIEYRCLIRA TDGKKTVSTS VGAKDHQRFQ ASYATILKAH MTALKKRERK DRKKSTEAEK
101: KESTSTTKSK KL

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.