Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G490800.1 | Wheat | cytosol | 92.14 | 99.23 |
| TraesCS2D01G467800.1 | Wheat | cytosol | 98.57 | 98.57 |
| TraesCS3A01G472700.1 | Wheat | cytosol | 41.43 | 82.86 |
| TraesCS1A01G083600.1 | Wheat | cytosol | 38.57 | 80.6 |
| TraesCS7A01G549600.1 | Wheat | cytosol, plastid | 40.0 | 80.0 |
| Os04t0623700-01 | Rice | nucleus | 75.0 | 79.55 |
| TraesCS3A01G307400.1 | Wheat | cytosol | 39.29 | 78.57 |
| TraesCS3A01G092500.1 | Wheat | cytosol, plastid | 39.29 | 78.57 |
| TraesCS1A01G132700.1 | Wheat | cytosol, plastid | 39.29 | 78.57 |
| TraesCS4A01G371300.1 | Wheat | cytosol | 38.57 | 77.14 |
| TraesCS1A01G199800.1 | Wheat | cytosol, plastid | 38.57 | 77.14 |
| Zm00001d002259_P002 | Maize | cytosol | 70.0 | 70.5 |
| GSMUA_Achr11P... | Banana | cytosol | 55.0 | 65.25 |
| AT2G43640.1 | Thale cress | cytosol | 53.57 | 61.98 |
| Bra037694.1-P | Field mustard | cytosol | 52.14 | 59.84 |
| CDY30427 | Canola | cytosol | 45.0 | 58.88 |
| KRH40004 | Soybean | cytosol | 50.0 | 58.33 |
| Bra000316.1-P | Field mustard | cytosol | 45.0 | 57.8 |
| CDY44245 | Canola | cytosol | 45.0 | 57.8 |
| CDX83471 | Canola | cytosol | 44.29 | 56.88 |
| CDY30425 | Canola | cytosol | 43.57 | 56.48 |
| Bra037696.1-P | Field mustard | cytosol | 43.57 | 56.48 |
| CDY23384 | Canola | cytosol | 41.43 | 53.7 |
| VIT_05s0094g00400.t01 | Wine grape | cytosol | 40.0 | 52.83 |
| PGSC0003DMT400042031 | Potato | cytosol | 46.43 | 52.0 |
| OQU82368 | Sorghum | plastid | 64.29 | 45.0 |
| CDY69452 | Canola | cytosol | 52.86 | 41.34 |
| KRH23789 | Soybean | cytosol | 37.86 | 41.09 |
| KRH33974 | Soybean | cytosol, endoplasmic reticulum, nucleus | 17.86 | 37.88 |
| TraesCS3A01G166400.2 | Wheat | cytosol | 44.29 | 29.95 |
| CDX79810 | Canola | cytosol | 53.57 | 24.75 |
| Bra004775.1-P | Field mustard | cytosol | 53.57 | 24.75 |
Protein Annotations
| MapMan:23.3.1.1.4 | Gene3D:3.30.720.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | GO:GO:0048500 | InterPro:IPR009018 |
| PFAM:PD009170 | PFAM:PF02290 | PANTHER:PTHR12013 | SUPFAM:SSF54762 | InterPro:Signal_recog_particle_SRP14 | InterPro:Signal_recog_particle_SRP9/14 |
| EnsemblPlantsGene:TraesCS2A01G467800 | EnsemblPlants:TraesCS2A01G467800.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:711974041..711976193
Molecular Weight (calculated)
15974.6 Da
IEP (calculated)
10.896
GRAVY (calculated)
-0.871
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTRGIAWSV QVLMQADPFL SELTNMYERS TEKGSVWVTM KRSSMKCQAR LKKMASKGEP VEYRCLVRAS DGKRNISTSL SAKEYLKFQA SYALVLKAHM
101: HALKKRERKD RKKTVEAEKI PEKEPKKQKK SSSKKSAGSK
101: HALKKRERKD RKKTVEAEKI PEKEPKKQKK SSSKKSAGSK
001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L
101: RKKSTEAEKK ESTSTTKSKK L
Arabidopsis Description
SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.