CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30425	Canola	cytosol	91.59	90.74
CDX83471	Canola	cytosol	90.65	88.99
CDY44245	Canola	cytosol	89.72	88.07
Bra037694.1-P	Field mustard	cytosol	100.0	87.7
CDY23384	Canola	cytosol	87.85	87.04
AT2G43640.1	Thale cress	cytosol	87.85	77.69
VIT_05s0094g00400.t01	Wine grape	cytosol	69.16	69.81
KRH40004	Soybean	cytosol	75.7	67.5
GSMUA_Achr11P...	Banana	cytosol	65.42	59.32
KRH23789	Soybean	cytosol	68.22	56.59
CDY69452	Canola	cytosol	94.39	56.42
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	34.58	56.06
PGSC0003DMT400042031	Potato	cytosol	61.68	52.8
TraesCS2B01G490800.1	Wheat	cytosol	58.88	48.46
Os04t0623700-01	Rice	nucleus	58.88	47.73
TraesCS3D01G128100.1	Wheat	cytosol	29.91	45.71
TraesCS2D01G467800.1	Wheat	cytosol	59.81	45.71
Zm00001d002259_P002	Maize	cytosol	58.88	45.32
TraesCS2A01G467800.1	Wheat	nucleus	58.88	45.0
TraesCS3A01G472700.1	Wheat	cytosol	28.97	44.29
TraesCS1A01G132700.1	Wheat	cytosol, plastid	28.04	42.86
TraesCS3A01G092500.1	Wheat	cytosol, plastid	28.04	42.86
TraesCS7A01G549600.1	Wheat	cytosol, plastid	28.04	42.86
TraesCS7B01G031200.1	Wheat	cytosol	28.04	42.86
TraesCS7D01G219900.1	Wheat	cytosol	28.04	42.86
TraesCS1A01G083600.1	Wheat	cytosol	26.17	41.79
TraesCS1A01G199800.1	Wheat	cytosol, plastid	27.1	41.43
TraesCS3A01G307400.1	Wheat	cytosol	27.1	41.43
TraesCS4A01G371300.1	Wheat	cytosol	27.1	41.43
CDX79810	Canola	cytosol	95.33	33.66
OQU82368	Sorghum	plastid	60.75	32.5
TraesCS3A01G166400.2	Wheat	cytosol	32.71	16.91

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078GYX3	UniProt:A0A078GYX3	EnsemblPlants:CDY30427	ProteinID:CDY30427
ProteinID:CDY30427.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00045127001	InterPro:IPR009018
PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14
UniParc:UPI0004EF14EC	SEG:seg	:	:	:	:

Description

BnaA04g25280DBnaA04g25280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYX3]

Coordinates

chrLK032253:-:239327..241075

Molecular Weight (calculated)

12156.9 Da

IEP (calculated)

11.118

GRAVY (calculated)

-0.975

Length

107 amino acids

Sequence
(BLAST)

001: MFEKSKEKGS VWVTLKRSSL KSKLQKRKLS AAGESIEYRC LIRATDAKKT ISTSVGAKDH LRFQASYATI LKAHMTALKK RERKDRKKPT EAEKKESTST
101: STKPKKL

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.