Factsheet for Zm00001d002259_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G490800.1	Wheat	cytosol	71.22	76.15
Os04t0623700-01	Rice	nucleus	71.22	75.0
TraesCS2A01G467800.1	Wheat	nucleus	70.5	70.0
TraesCS2D01G467800.1	Wheat	cytosol	69.78	69.29
TraesCS3A01G472700.1	Wheat	cytosol	32.37	64.29
TraesCS4A01G371300.1	Wheat	cytosol	31.65	62.86
TraesCS3D01G128100.1	Wheat	cytosol	31.65	62.86
AT2G43640.1	Thale cress	cytosol	54.68	62.81
GSMUA_Achr11P...	Banana	cytosol	52.52	61.86
KRH40004	Soybean	cytosol	53.24	61.67
TraesCS3A01G092500.1	Wheat	cytosol, plastid	30.94	61.43
TraesCS7B01G031200.1	Wheat	cytosol	30.94	61.43
TraesCS7A01G549600.1	Wheat	cytosol, plastid	30.94	61.43
TraesCS1A01G083600.1	Wheat	cytosol	29.5	61.19
Bra037694.1-P	Field mustard	cytosol	53.24	60.66
TraesCS3A01G307400.1	Wheat	cytosol	30.22	60.0
TraesCS7D01G219900.1	Wheat	cytosol	30.22	60.0
TraesCS1A01G132700.1	Wheat	cytosol, plastid	30.22	60.0
TraesCS1A01G199800.1	Wheat	cytosol, plastid	30.22	60.0
CDY30427	Canola	cytosol	45.32	58.88
CDY30425	Canola	cytosol	44.6	57.41
Bra037696.1-P	Field mustard	cytosol	44.6	57.41
Bra000316.1-P	Field mustard	cytosol	44.6	56.88
CDY44245	Canola	cytosol	44.6	56.88
PGSC0003DMT400042031	Potato	cytosol	51.08	56.8
OQU82368	Sorghum	plastid	81.3	56.5
CDX83471	Canola	cytosol	43.88	55.96
VIT_05s0094g00400.t01	Wine grape	cytosol	41.73	54.72
CDY23384	Canola	cytosol	42.45	54.63
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	21.58	45.45
KRH23789	Soybean	cytosol	40.29	43.41
CDY69452	Canola	cytosol	52.52	40.78
CDX79810	Canola	cytosol	52.52	24.09
Bra004775.1-P	Field mustard	cytosol	52.52	24.09
TraesCS3A01G166400.2	Wheat	cytosol	33.09	22.22

Protein Annotations

EntrezGene:100280752	EntrezGene:100383868	MapMan:23.3.1.1.4	Gene3D:3.30.720.10	UniProt:A0A1D6DYT1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	GO:GO:0048500	InterPro:IPR009018	ProteinID:ONM13719.1	ProteinID:ONM13720.1	PFAM:PD009170
PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0008423DA8
EnsemblPlantsGene:Zm00001d002259	EnsemblPlants:Zm00001d002259_P002	EnsemblPlants:Zm00001d002259_T002	SEG:seg	:	:

Description

Signal recognition particle 14 kDa protein

Coordinates

chr2:-:9085387..9088904

Molecular Weight (calculated)

15736.3 Da

IEP (calculated)

11.034

GRAVY (calculated)

-0.888

Length

139 amino acids

Sequence
(BLAST)

001: MVVLQPDRFL SELTSMYERS TEKGSVWVTM KRSTLKGKAQ LRKMENKGQE VEHRCLVRAS NGKKNISTSL LAKSFIKVSL KEYTKFQASY ATVLKAHMHA
101: LKKRERKDKK KTADAEKAIE TAPKKQKKAS SKKSSGSKS

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.