Factsheet for GSMUA_Achr11P11170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00400.t01	Wine grape	cytosol	60.17	66.98
Bra000316.1-P	Field mustard	cytosol	61.86	66.97
CDY44245	Canola	cytosol	61.86	66.97
Bra037696.1-P	Field mustard	cytosol	61.02	66.67
CDY30425	Canola	cytosol	61.02	66.67
CDX83471	Canola	cytosol	61.02	66.06
CDY30427	Canola	cytosol	59.32	65.42
CDY23384	Canola	cytosol	58.47	63.89
KRH40004	Soybean	cytosol	61.86	60.83
Os04t0623700-01	Rice	nucleus	66.95	59.85
AT2G43640.1	Thale cress	cytosol	61.02	59.5
TraesCS2B01G490800.1	Wheat	cytosol	65.25	59.23
Bra037694.1-P	Field mustard	cytosol	59.32	57.38
PGSC0003DMT400042031	Potato	cytosol	59.32	56.0
TraesCS2D01G467800.1	Wheat	cytosol	66.1	55.71
TraesCS3D01G128100.1	Wheat	cytosol	33.05	55.71
TraesCS3A01G472700.1	Wheat	cytosol	33.05	55.71
TraesCS1A01G083600.1	Wheat	cytosol	31.36	55.22
TraesCS2A01G467800.1	Wheat	nucleus	65.25	55.0
TraesCS7D01G219900.1	Wheat	cytosol	32.2	54.29
TraesCS7B01G031200.1	Wheat	cytosol	32.2	54.29
TraesCS7A01G549600.1	Wheat	cytosol, plastid	32.2	54.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	32.2	54.29
TraesCS1A01G132700.1	Wheat	cytosol, plastid	31.36	52.86
TraesCS1A01G199800.1	Wheat	cytosol, plastid	31.36	52.86
TraesCS4A01G371300.1	Wheat	cytosol	31.36	52.86
TraesCS3A01G307400.1	Wheat	cytosol	31.36	52.86
Zm00001d002259_P002	Maize	cytosol	61.86	52.52
KRH23789	Soybean	cytosol	55.08	50.39
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	25.42	45.45
CDY69452	Canola	cytosol	61.02	40.22
OQU82368	Sorghum	plastid	60.17	35.5
CDX79810	Canola	cytosol	59.32	23.1
Bra004775.1-P	Field mustard	cytosol	59.32	23.1
TraesCS3A01G166400.2	Wheat	cytosol	35.59	20.29

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSMUA_Achr11G11170_001
EnsemblPlants:GSMUA_Achr11P11170_001	EnsemblPlants:GSMUA_Achr11T11170_001	InterPro:IPR009018	UniProt:M0RR97	PFAM:PD009170	PFAM:PF02290
PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI000295487D	SEG:seg

Description

Signal recognition particle 14 kDa protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G11170_001]

Coordinates

chr11:+:8862582..8866900

Molecular Weight (calculated)

13350.2 Da

IEP (calculated)

10.958

GRAVY (calculated)

-1.111

Length

118 amino acids

Sequence
(BLAST)

001: MFERSTEKGS VWVTLKRSSM KCKATRKKME TAGETIEYRC LVRATDGKKT ISTSLSARDY QKFQASYATV LKAHMNALKK RERKDKKKTA EPEKKQASSK
101: KKSEPFKKPA APASKASQ

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.