CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004775.1-P	Field mustard	cytosol	99.34	99.34
CDY30427	Canola	cytosol	33.66	95.33
CDY44245	Canola	cytosol	33.0	91.74
AT2G43640.1	Thale cress	cytosol	36.3	90.91
CDX83471	Canola	cytosol	32.67	90.83
CDY30425	Canola	cytosol	32.34	90.74
CDY23384	Canola	cytosol	31.02	87.04
KRH40004	Soybean	cytosol	31.02	78.33
VIT_05s0094g00400.t01	Wine grape	cytosol	24.42	69.81
CDY69452	Canola	cytosol	40.59	68.72
PGSC0003DMT400042031	Potato	cytosol	25.74	62.4
GSMUA_Achr11P...	Banana	cytosol	23.1	59.32
KRH23789	Soybean	cytosol	24.75	58.14
TraesCS3A01G472700.1	Wheat	cytosol	13.2	57.14
TraesCS3D01G128100.1	Wheat	cytosol	13.2	57.14
TraesCS2B01G490800.1	Wheat	cytosol	24.42	56.92
Os04t0623700-01	Rice	nucleus	24.42	56.06
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	11.88	54.55
TraesCS7D01G219900.1	Wheat	cytosol	12.54	54.29
TraesCS7A01G549600.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS1A01G132700.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS2D01G467800.1	Wheat	cytosol	25.08	54.29
TraesCS1A01G083600.1	Wheat	cytosol	11.88	53.73
TraesCS2A01G467800.1	Wheat	nucleus	24.75	53.57
TraesCS3A01G307400.1	Wheat	cytosol	12.21	52.86
TraesCS4A01G371300.1	Wheat	cytosol	12.21	52.86
TraesCS1A01G199800.1	Wheat	cytosol, plastid	12.21	52.86
TraesCS7B01G031200.1	Wheat	cytosol	12.21	52.86
Zm00001d002259_P002	Maize	cytosol	24.09	52.52
OQU82368	Sorghum	plastid	26.07	39.5
TraesCS3A01G166400.2	Wheat	cytosol	15.51	22.71

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078CSJ6	EnsemblPlants:CDX79810	ProteinID:CDX79810	ProteinID:CDX79810.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00132642001	InterPro:IPR009018	PFAM:PD009170
PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0004EE9F43
SEG:seg	:	:	:	:	:

Description

BnaA05g03460D

Coordinates

chrLK031819:+:240554..243305

Molecular Weight (calculated)

33877.4 Da

IEP (calculated)

8.618

GRAVY (calculated)

-0.598

Length

303 amino acids

Sequence
(BLAST)

001: MLLPNSSTLV GAVETDSHLI PGHQTHKITT NSALTTPLEV PAPTTFTHSH EVQSTSCSKI ENNLPMLAVE ETAHPQSHVM EEIPSKEIIL ETPQASENEQ
101: SIGHYSPIAN NLQQFHMERD LSPLTHRRDD GLVSAVDLRV DLFTVFDDLG DSREKKSLQC LTICKEYPSE VFSNGNLRSI PEVLLQLDPF LNELTSMFEK
201: SKEKGSVWVT LKRSSLKSKL QKRKLSSAGE SIEYRCLIRA TDAKKTISTS VGAKDHLRFQ ASYATILKAH MTALKKRERK DRKKSTEAEK KEGTSTTTKP
301: KKP

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.