CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037694.1-P	Field mustard	cytosol	80.0	78.69
AT2G43640.1	Thale cress	cytosol	79.17	78.51
VIT_05s0094g00400.t01	Wine grape	cytosol	68.33	77.36
Bra037696.1-P	Field mustard	cytosol	68.33	75.93
CDY30425	Canola	cytosol	68.33	75.93
CDY30427	Canola	cytosol	67.5	75.7
CDY44245	Canola	cytosol	66.67	73.39
CDY23384	Canola	cytosol	65.83	73.15
Bra000316.1-P	Field mustard	cytosol	65.83	72.48
CDX83471	Canola	cytosol	65.0	71.56
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	39.17	71.21
KRH23789	Soybean	cytosol	75.83	70.54
PGSC0003DMT400042031	Potato	cytosol	70.83	68.0
GSMUA_Achr11P...	Banana	cytosol	60.83	61.86
Os04t0623700-01	Rice	nucleus	63.33	57.58
TraesCS3A01G472700.1	Wheat	cytosol	33.33	57.14
TraesCS2B01G490800.1	Wheat	cytosol	59.17	54.62
TraesCS7D01G219900.1	Wheat	cytosol	31.67	54.29
TraesCS7B01G031200.1	Wheat	cytosol	31.67	54.29
TraesCS7A01G549600.1	Wheat	cytosol, plastid	31.67	54.29
TraesCS3D01G128100.1	Wheat	cytosol	31.67	54.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	31.67	54.29
TraesCS1A01G083600.1	Wheat	cytosol	30.0	53.73
Zm00001d002259_P002	Maize	cytosol	61.67	53.24
TraesCS3A01G307400.1	Wheat	cytosol	30.83	52.86
TraesCS1A01G199800.1	Wheat	cytosol, plastid	30.83	52.86
TraesCS4A01G371300.1	Wheat	cytosol	30.83	52.86
TraesCS1A01G132700.1	Wheat	cytosol, plastid	30.83	52.86
CDY69452	Canola	cytosol	78.33	52.51
TraesCS2D01G467800.1	Wheat	cytosol	59.17	50.71
TraesCS2A01G467800.1	Wheat	nucleus	58.33	50.0
OQU82368	Sorghum	plastid	61.67	37.0
CDX79810	Canola	cytosol	78.33	31.02
Bra004775.1-P	Field mustard	cytosol	78.33	31.02
TraesCS3A01G166400.2	Wheat	cytosol	35.83	20.77

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	EMBL:ACUP02006014	EnsemblPlantsGene:GLYMA_09G232500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942
GO:GO:0045047	GO:GO:0048500	UniProt:I1L5R5	InterPro:IPR009018	EnsemblPlants:KRH40004	ProteinID:KRH40004
ProteinID:KRH40004.1	PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14
InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI00023C8ED2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:45561627..45566836

Molecular Weight (calculated)

13576.7 Da

IEP (calculated)

11.201

GRAVY (calculated)

-0.709

Length

120 amino acids

Sequence
(BLAST)

001: MVLLQLDPFL NELTSMFERS TKLGSVWVTL KRSSLKSKVQ RNKLAAAGEA IEFRCLIRAT DGKKTISTSV GPKDHQRFQA SYATILKAHM TALKKRERKD
101: KKKPAEADKR EGSSKRLKKS

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.