Factsheet for PGSC0003DMT400042031

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40004	Soybean	cytosol	68.0	70.83
AT2G43640.1	Thale cress	cytosol	64.8	66.94
VIT_05s0094g00400.t01	Wine grape	cytosol	55.2	65.09
Bra037694.1-P	Field mustard	cytosol	63.2	64.75
Bra037696.1-P	Field mustard	cytosol	55.2	63.89
CDY30425	Canola	cytosol	55.2	63.89
CDY23384	Canola	cytosol	53.6	62.04
CDY30427	Canola	cytosol	52.8	61.68
Bra000316.1-P	Field mustard	cytosol	53.6	61.47
CDY44245	Canola	cytosol	53.6	61.47
CDX83471	Canola	cytosol	52.8	60.55
GSMUA_Achr11P...	Banana	cytosol	56.0	59.32
Os04t0623700-01	Rice	nucleus	59.2	56.06
TraesCS7D01G219900.1	Wheat	cytosol	31.2	55.71
TraesCS3A01G472700.1	Wheat	cytosol	31.2	55.71
TraesCS7B01G031200.1	Wheat	cytosol	30.4	54.29
TraesCS3D01G128100.1	Wheat	cytosol	30.4	54.29
TraesCS7A01G549600.1	Wheat	cytosol, plastid	29.6	52.86
TraesCS3A01G307400.1	Wheat	cytosol	29.6	52.86
TraesCS3A01G092500.1	Wheat	cytosol, plastid	29.6	52.86
TraesCS1A01G083600.1	Wheat	cytosol	28.0	52.24
TraesCS4A01G371300.1	Wheat	cytosol	28.8	51.43
TraesCS1A01G132700.1	Wheat	cytosol, plastid	28.8	51.43
TraesCS1A01G199800.1	Wheat	cytosol, plastid	28.8	51.43
Zm00001d002259_P002	Maize	cytosol	56.8	51.08
TraesCS2B01G490800.1	Wheat	cytosol	52.8	50.77
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	25.6	48.48
KRH23789	Soybean	cytosol	49.6	48.06
TraesCS2D01G467800.1	Wheat	cytosol	52.8	47.14
TraesCS2A01G467800.1	Wheat	nucleus	52.0	46.43
CDY69452	Canola	cytosol	63.2	44.13
OQU82368	Sorghum	plastid	57.6	36.0
CDX79810	Canola	cytosol	62.4	25.74
Bra004775.1-P	Field mustard	cytosol	62.4	25.74
TraesCS3A01G166400.2	Wheat	cytosol	33.6	20.29

Protein Annotations

EntrezGene:102601948	MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500
InterPro:IPR009018	UniProt:M1BCD5	PFAM:PD009170	PFAM:PF02290	EnsemblPlantsGene:PGSC0003DMG400016301	PGSC:PGSC0003DMG400016301
EnsemblPlants:PGSC0003DMT400042031	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0002966E29
RefSeq:XP_006350709.1	SEG:seg	:	:	:	:

Description

Signal recognition particle 14 kDa protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016301]

Coordinates

chr6:-:39119463..39126394

Molecular Weight (calculated)

14185.2 Da

IEP (calculated)

10.997

GRAVY (calculated)

-0.899

Length

125 amino acids

Sequence
(BLAST)

001: MVRLQPDPFL NELTSMFERT TEHGSVWVTL KHSSDKSKAQ RNKMKTAGEN LEFKCLIRAT DGKKNISTMV GAKDHQRFQA SYAILLKARL TALKKRERKD
101: KRKATDSDKK MDISKKKSAA AKAST

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.