CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83471	Canola	cytosol	97.25	97.25
CDY30425	Canola	cytosol	89.91	90.74
CDY30427	Canola	cytosol	88.07	89.72
CDY23384	Canola	cytosol	87.16	87.96
AT2G43640.1	Thale cress	cytosol	87.16	78.51
VIT_05s0094g00400.t01	Wine grape	cytosol	66.97	68.87
KRH40004	Soybean	cytosol	73.39	66.67
GSMUA_Achr11P...	Banana	cytosol	66.97	61.86
KRH23789	Soybean	cytosol	66.97	56.59
CDY69452	Canola	cytosol	89.91	54.75
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	33.03	54.55
PGSC0003DMT400042031	Potato	cytosol	61.47	53.6
TraesCS2B01G490800.1	Wheat	cytosol	57.8	48.46
Os04t0623700-01	Rice	nucleus	55.96	46.21
TraesCS3D01G128100.1	Wheat	cytosol	29.36	45.71
TraesCS2D01G467800.1	Wheat	cytosol	58.72	45.71
TraesCS2A01G467800.1	Wheat	nucleus	57.8	45.0
Zm00001d002259_P002	Maize	cytosol	56.88	44.6
TraesCS3A01G472700.1	Wheat	cytosol	28.44	44.29
TraesCS7A01G549600.1	Wheat	cytosol, plastid	27.52	42.86
TraesCS7D01G219900.1	Wheat	cytosol	27.52	42.86
TraesCS1A01G132700.1	Wheat	cytosol, plastid	27.52	42.86
TraesCS3A01G092500.1	Wheat	cytosol, plastid	27.52	42.86
TraesCS1A01G083600.1	Wheat	cytosol	25.69	41.79
TraesCS3A01G307400.1	Wheat	cytosol	26.61	41.43
TraesCS4A01G371300.1	Wheat	cytosol	26.61	41.43
TraesCS1A01G199800.1	Wheat	cytosol, plastid	26.61	41.43
TraesCS7B01G031200.1	Wheat	cytosol	26.61	41.43
CDX79810	Canola	cytosol	91.74	33.0
OQU82368	Sorghum	plastid	56.88	31.0
TraesCS3A01G166400.2	Wheat	cytosol	32.11	16.91

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078I049	UniProt:A0A078I049	EnsemblPlants:CDY44245	ProteinID:CDY44245
ProteinID:CDY44245.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00079752001	InterPro:IPR009018
PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14
UniParc:UPI0004EE9346	SEG:seg	:	:	:	:

Description

BnaC03g24370DBnaC03g24370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I049]

Coordinates

chrLK032583:-:178068..179330

Molecular Weight (calculated)

12321.0 Da

IEP (calculated)

11.091

GRAVY (calculated)

-0.979

Length

109 amino acids

Sequence
(BLAST)

001: MFEKSQDKGS VWVTLKRSSL KSKLQKRKLS SAGESIEYRC LIRATDAKKT ISTSVGAKDH LRFQASYATI LKAHMTALKK RERKDRKKST EAEKKEGTST
101: TTSKPTKKL

Best Arabidopsis Sequence Match ( AT2G43640.1 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.