CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000316.1-P	Field mustard	cytosol	99.08	99.08
CDY44245	Canola	cytosol	97.25	97.25
CDY30425	Canola	cytosol	90.83	91.67
CDY30427	Canola	cytosol	88.99	90.65
CDY23384	Canola	cytosol	88.07	88.89
AT2G43640.1	Thale cress	cytosol	88.07	79.34
VIT_05s0094g00400.t01	Wine grape	cytosol	66.06	67.92
KRH40004	Soybean	cytosol	71.56	65.0
GSMUA_Achr11P...	Banana	cytosol	66.06	61.02
KRH23789	Soybean	cytosol	66.06	55.81
CDY69452	Canola	cytosol	88.99	54.19
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	32.11	53.03
PGSC0003DMT400042031	Potato	cytosol	60.55	52.8
TraesCS2B01G490800.1	Wheat	cytosol	56.88	47.69
Os04t0623700-01	Rice	nucleus	55.05	45.45
TraesCS2D01G467800.1	Wheat	cytosol	57.8	45.0
TraesCS3D01G128100.1	Wheat	cytosol	28.44	44.29
TraesCS2A01G467800.1	Wheat	nucleus	56.88	44.29
Zm00001d002259_P002	Maize	cytosol	55.96	43.88
TraesCS3A01G472700.1	Wheat	cytosol	27.52	42.86
TraesCS1A01G132700.1	Wheat	cytosol, plastid	26.61	41.43
TraesCS3A01G092500.1	Wheat	cytosol, plastid	26.61	41.43
TraesCS7A01G549600.1	Wheat	cytosol, plastid	26.61	41.43
TraesCS7D01G219900.1	Wheat	cytosol	26.61	41.43
TraesCS1A01G083600.1	Wheat	cytosol	24.77	40.3
TraesCS1A01G199800.1	Wheat	cytosol, plastid	25.69	40.0
TraesCS3A01G307400.1	Wheat	cytosol	25.69	40.0
TraesCS4A01G371300.1	Wheat	cytosol	25.69	40.0
TraesCS7B01G031200.1	Wheat	cytosol	25.69	40.0
CDX79810	Canola	cytosol	90.83	32.67
OQU82368	Sorghum	plastid	55.96	30.5
TraesCS3A01G166400.2	Wheat	cytosol	31.19	16.43

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078D272	EnsemblPlants:CDX83471	ProteinID:CDX83471	ProteinID:CDX83471.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00139049001	InterPro:IPR009018	PFAM:PD009170
PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0004EE0EA2
SEG:seg	:	:	:	:	:

Description

BnaA03g20350D

Coordinates

chrLK031832:+:1667397..1668645

Molecular Weight (calculated)

12365.0 Da

IEP (calculated)

11.118

GRAVY (calculated)

-0.983

Length

109 amino acids

Sequence
(BLAST)

001: MFEKSKDKGS VWITLKRSSL KSKLQKRKLS SAGESIEYRC LIRATDAKKT ISTSVGAKDH LRFQASYATI LKAHMTALKK RERKDRKKST EAEKKESTST
101: TTSKPTKKL

Best Arabidopsis Sequence Match ( AT2G43640.1 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.