Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G549600.1 | Wheat | cytosol, plastid | 95.52 | 91.43 |
| TraesCS3A01G307400.1 | Wheat | cytosol | 94.03 | 90.0 |
| TraesCS3A01G092500.1 | Wheat | cytosol, plastid | 94.03 | 90.0 |
| TraesCS1A01G132700.1 | Wheat | cytosol, plastid | 94.03 | 90.0 |
| TraesCS1A01G199800.1 | Wheat | cytosol, plastid | 92.54 | 88.57 |
| TraesCS3D01G128100.1 | Wheat | cytosol | 89.55 | 85.71 |
| TraesCS4A01G371300.1 | Wheat | cytosol | 88.06 | 84.29 |
| TraesCS3A01G472700.1 | Wheat | cytosol | 86.57 | 82.86 |
| TraesCS2A01G467800.1 | Wheat | nucleus | 80.6 | 38.57 |
| Os04t0623700-01 | Rice | nucleus | 73.13 | 37.12 |
| GSMUA_Achr11P... | Banana | cytosol | 55.22 | 31.36 |
| KRH40004 | Soybean | cytosol | 53.73 | 30.0 |
| TraesCS3A01G166400.2 | Wheat | cytosol | 92.54 | 29.95 |
| AT2G43640.1 | Thale cress | cytosol | 53.73 | 29.75 |
| Zm00001d002259_P002 | Maize | cytosol | 61.19 | 29.5 |
| Bra037694.1-P | Field mustard | cytosol | 52.24 | 28.69 |
| PGSC0003DMT400042031 | Potato | cytosol | 52.24 | 28.0 |
| CDY30427 | Canola | cytosol | 41.79 | 26.17 |
| CDY30425 | Canola | cytosol | 41.79 | 25.93 |
| Bra037696.1-P | Field mustard | cytosol | 41.79 | 25.93 |
| CDY44245 | Canola | cytosol | 41.79 | 25.69 |
| Bra000316.1-P | Field mustard | cytosol | 41.79 | 25.69 |
| CDX83471 | Canola | cytosol | 40.3 | 24.77 |
| VIT_05s0094g00400.t01 | Wine grape | cytosol | 38.81 | 24.53 |
| CDY23384 | Canola | cytosol | 38.81 | 24.07 |
| OQU82368 | Sorghum | plastid | 61.19 | 20.5 |
| KRH23789 | Soybean | cytosol | 38.81 | 20.16 |
| CDY69452 | Canola | cytosol | 53.73 | 20.11 |
| CDX79810 | Canola | cytosol | 53.73 | 11.88 |
| Bra004775.1-P | Field mustard | cytosol | 53.73 | 11.88 |
| KRH33974 | Soybean | cytosol, endoplasmic reticulum, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:23.3.1.1.4 | Gene3D:3.30.720.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | GO:GO:0048500 | InterPro:IPR009018 |
| PFAM:PD009170 | PFAM:PF02290 | PANTHER:PTHR12013 | SUPFAM:SSF54762 | InterPro:Signal_recog_particle_SRP14 | InterPro:Signal_recog_particle_SRP9/14 |
| EnsemblPlantsGene:TraesCS1A01G083600 | EnsemblPlants:TraesCS1A01G083600.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:67960741..67961244
Molecular Weight (calculated)
7653.6 Da
IEP (calculated)
10.553
GRAVY (calculated)
-0.446
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MQADMFLTKL TSMCKRSTEK GSMWVTMKRL LMKCQARLKK MASNGEPVEY RCLVCATDGK RNISTSK
001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L
101: RKKSTEAEKK ESTSTTKSKK L
Arabidopsis Description
SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.