CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30427	Canola	cytosol	56.42	94.39
AT2G43640.1	Thale cress	cytosol	61.45	90.91
CDY30425	Canola	cytosol	54.75	90.74
CDY44245	Canola	cytosol	54.75	89.91
CDX83471	Canola	cytosol	54.19	88.99
CDY23384	Canola	cytosol	52.51	87.04
KRH40004	Soybean	cytosol	52.51	78.33
VIT_05s0094g00400.t01	Wine grape	cytosol	41.9	70.75
PGSC0003DMT400042031	Potato	cytosol	44.13	63.2
GSMUA_Achr11P...	Banana	cytosol	40.22	61.02
KRH23789	Soybean	cytosol	41.9	58.14
TraesCS3D01G128100.1	Wheat	cytosol	22.35	57.14
TraesCS3A01G472700.1	Wheat	cytosol	22.35	57.14
TraesCS2B01G490800.1	Wheat	cytosol	40.78	56.15
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	20.67	56.06
Os04t0623700-01	Rice	nucleus	40.22	54.55
TraesCS7A01G549600.1	Wheat	cytosol, plastid	21.23	54.29
TraesCS1A01G132700.1	Wheat	cytosol, plastid	21.23	54.29
TraesCS7D01G219900.1	Wheat	cytosol	21.23	54.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	21.23	54.29
TraesCS1A01G083600.1	Wheat	cytosol	20.11	53.73
TraesCS2D01G467800.1	Wheat	cytosol	41.9	53.57
TraesCS3A01G307400.1	Wheat	cytosol	20.67	52.86
TraesCS2A01G467800.1	Wheat	nucleus	41.34	52.86
TraesCS1A01G199800.1	Wheat	cytosol, plastid	20.67	52.86
TraesCS4A01G371300.1	Wheat	cytosol	20.67	52.86
TraesCS7B01G031200.1	Wheat	cytosol	20.67	52.86
Zm00001d002259_P002	Maize	cytosol	40.78	52.52
CDX79810	Canola	cytosol	68.72	40.59
OQU82368	Sorghum	plastid	44.13	39.5
TraesCS3A01G166400.2	Wheat	cytosol	27.37	23.67

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078JVC2	UniProt:A0A078JVC2	EnsemblPlants:CDY69452	ProteinID:CDY69452
ProteinID:CDY69452.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00087796001	InterPro:IPR009018
PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14
UniParc:UPI0004EF2664	SEG:seg	:	:	:	:

Description

BnaCnng63570DBnaCnng63570D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JVC2]

Coordinates

chrLK039472:+:2..2324

Molecular Weight (calculated)

20535.0 Da

IEP (calculated)

10.769

GRAVY (calculated)

-0.797

Length

179 amino acids

Sequence
(BLAST)

001: DDTFLKISII KIMHRPPNKF SPPGGFRRAD HQIPYLLCDS REKKSLQCLR ICKEYSSEVL LQLDPFLNEL TSMFEKSKEK GSVWVTLKRS SLKSKLQKRK
101: LSSAGESIEY RCLIRATDAK KTISTSVGAK DHQRFQASYA TILKAHMTAL KKRERKDRKK STEAEKKQGT STTTKPKKL

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.