CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40004	Soybean	cytosol	70.54	75.83
VIT_05s0094g00400.t01	Wine grape	cytosol	58.91	71.7
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	35.66	69.7
Bra037696.1-P	Field mustard	cytosol	57.36	68.52
CDY30425	Canola	cytosol	57.36	68.52
CDY30427	Canola	cytosol	56.59	68.22
CDY44245	Canola	cytosol	56.59	66.97
CDY23384	Canola	cytosol	55.81	66.67
Bra000316.1-P	Field mustard	cytosol	55.81	66.06
CDX83471	Canola	cytosol	55.81	66.06
AT2G43640.1	Thale cress	cytosol	58.14	61.98
Bra037694.1-P	Field mustard	cytosol	58.14	61.48
GSMUA_Achr11P...	Banana	cytosol	50.39	55.08
PGSC0003DMT400042031	Potato	cytosol	48.06	49.6
Os04t0623700-01	Rice	nucleus	43.41	42.42
CDY69452	Canola	cytosol	58.14	41.9
TraesCS2B01G490800.1	Wheat	cytosol	41.09	40.77
Zm00001d002259_P002	Maize	cytosol	43.41	40.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	21.71	40.0
TraesCS7A01G549600.1	Wheat	cytosol, plastid	21.71	40.0
TraesCS3A01G472700.1	Wheat	cytosol	21.71	40.0
TraesCS1A01G199800.1	Wheat	cytosol, plastid	21.71	40.0
TraesCS1A01G132700.1	Wheat	cytosol, plastid	21.71	40.0
TraesCS1A01G083600.1	Wheat	cytosol	20.16	38.81
TraesCS2D01G467800.1	Wheat	cytosol	41.86	38.57
TraesCS3A01G307400.1	Wheat	cytosol	20.93	38.57
TraesCS3D01G128100.1	Wheat	cytosol	20.93	38.57
TraesCS2A01G467800.1	Wheat	nucleus	41.09	37.86
TraesCS7B01G031200.1	Wheat	cytosol	20.16	37.14
TraesCS7D01G219900.1	Wheat	cytosol	20.16	37.14
TraesCS4A01G371300.1	Wheat	cytosol	19.38	35.71
OQU82368	Sorghum	plastid	44.19	28.5
CDX79810	Canola	cytosol	58.14	24.75
Bra004775.1-P	Field mustard	cytosol	58.14	24.75
TraesCS3A01G166400.2	Wheat	cytosol	24.81	15.46

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	UniProt:A0A0R0GZH5	EMBL:ACUP02007160	EnsemblPlantsGene:GLYMA_12G004000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	GO:GO:0048500	InterPro:IPR009018	EnsemblPlants:KRH23789	ProteinID:KRH23789	ProteinID:KRH23789.1
PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14
UniParc:UPI0006ED5145	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:317147..323335

Molecular Weight (calculated)

14491.5 Da

IEP (calculated)

11.024

GRAVY (calculated)

-0.813

Length

129 amino acids

Sequence
(BLAST)

001: MVLKRVFQSS HSLFVIFHSD SKGEQNETEA RVQSMIAVTV TSSLKSKVQR NKLATAGEAI EYRCLIRATD GKKTISTSVG PKDHQRFQAS YATILKAHMT
101: ALKKRERKDK KKPAEADKRE GSSKRPKKS

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.