Factsheet for VIT_05s0094g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30427	Canola	cytosol	69.81	69.16
Bra037696.1-P	Field mustard	cytosol	69.81	68.52
CDY30425	Canola	cytosol	69.81	68.52
KRH40004	Soybean	cytosol	77.36	68.33
Bra000316.1-P	Field mustard	cytosol	68.87	66.97
CDY44245	Canola	cytosol	68.87	66.97
CDX83471	Canola	cytosol	67.92	66.06
CDY23384	Canola	cytosol	66.98	65.74
AT2G43640.1	Thale cress	cytosol	69.81	61.16
Bra037694.1-P	Field mustard	cytosol	69.81	60.66
GSMUA_Achr11P...	Banana	cytosol	66.98	60.17
KRH23789	Soybean	cytosol	71.7	58.91
PGSC0003DMT400042031	Potato	cytosol	65.09	55.2
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	33.96	54.55
Os04t0623700-01	Rice	nucleus	56.6	45.45
TraesCS2B01G490800.1	Wheat	cytosol	52.83	43.08
CDY69452	Canola	cytosol	70.75	41.9
Zm00001d002259_P002	Maize	cytosol	54.72	41.73
TraesCS3D01G128100.1	Wheat	cytosol	27.36	41.43
TraesCS3A01G472700.1	Wheat	cytosol	27.36	41.43
TraesCS2D01G467800.1	Wheat	cytosol	53.77	40.71
TraesCS3A01G092500.1	Wheat	cytosol, plastid	26.42	40.0
TraesCS7D01G219900.1	Wheat	cytosol	26.42	40.0
TraesCS7B01G031200.1	Wheat	cytosol	26.42	40.0
TraesCS7A01G549600.1	Wheat	cytosol, plastid	26.42	40.0
TraesCS2A01G467800.1	Wheat	nucleus	52.83	40.0
TraesCS1A01G083600.1	Wheat	cytosol	24.53	38.81
TraesCS3A01G307400.1	Wheat	cytosol	25.47	38.57
TraesCS1A01G199800.1	Wheat	cytosol, plastid	25.47	38.57
TraesCS1A01G132700.1	Wheat	cytosol, plastid	25.47	38.57
TraesCS4A01G371300.1	Wheat	cytosol	25.47	38.57
OQU82368	Sorghum	plastid	57.55	30.5
Bra004775.1-P	Field mustard	cytosol	69.81	24.42
CDX79810	Canola	cytosol	69.81	24.42
TraesCS3A01G166400.2	Wheat	cytosol	29.25	14.98

Protein Annotations

EntrezGene:100259285	wikigene:100259285	MapMan:23.3.1.1.4	Gene3D:3.30.720.10	ProteinID:CBI24664	ProteinID:CBI24664.3
UniProt:D7T2D3	EMBL:FN595507	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0045047	GO:GO:0048500
InterPro:IPR009018	EntrezGene:LOC100259285	wikigene:LOC100259285	PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013
SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	TIGR:TC67387	UniParc:UPI000198344B	ArrayExpress:VIT_05s0094g00400
EnsemblPlantsGene:VIT_05s0094g00400	EnsemblPlants:VIT_05s0094g00400.t01	unigene:Vvi.9049	RefSeq:XP_002275788	RefSeq:XP_002275788.1	RefSeq:XP_002275813
RefSeq:XP_002275813.1	RefSeq:XP_019075745.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:23708099..23712736

Molecular Weight (calculated)

11899.6 Da

IEP (calculated)

11.245

GRAVY (calculated)

-0.893

Length

106 amino acids

Sequence
(BLAST)

001: MFEHSTTKRS VWVTLKRSSL KSKVQRNKIT TAGEGIDYRC LIRATDGKKT ISASVGPKDH QRFQASYATI LKAHMTALKK RGRKDKKKAA EGVKKPDDPK
101: KIKTSV

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.