Factsheet for Bra004775.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79810	Canola	cytosol	99.34	99.34
Bra037694.1-P	Field mustard	cytosol	38.28	95.08
Bra000316.1-P	Field mustard	cytosol	33.0	91.74
AT2G43640.1	Thale cress	cytosol	36.3	90.91
Bra037696.1-P	Field mustard	cytosol	32.34	90.74
KRH40004	Soybean	cytosol	31.02	78.33
VIT_05s0094g00400.t01	Wine grape	cytosol	24.42	69.81
PGSC0003DMT400042031	Potato	cytosol	25.74	62.4
GSMUA_Achr11P...	Banana	cytosol	23.1	59.32
KRH23789	Soybean	cytosol	24.75	58.14
TraesCS3D01G128100.1	Wheat	cytosol	13.2	57.14
TraesCS3A01G472700.1	Wheat	cytosol	13.2	57.14
TraesCS2B01G490800.1	Wheat	cytosol	24.42	56.92
Os04t0623700-01	Rice	nucleus	24.42	56.06
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	11.88	54.55
TraesCS7A01G549600.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS7D01G219900.1	Wheat	cytosol	12.54	54.29
TraesCS3A01G092500.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS2D01G467800.1	Wheat	cytosol	25.08	54.29
TraesCS1A01G132700.1	Wheat	cytosol, plastid	12.54	54.29
TraesCS1A01G083600.1	Wheat	cytosol	11.88	53.73
TraesCS2A01G467800.1	Wheat	nucleus	24.75	53.57
TraesCS7B01G031200.1	Wheat	cytosol	12.21	52.86
TraesCS1A01G199800.1	Wheat	cytosol, plastid	12.21	52.86
TraesCS4A01G371300.1	Wheat	cytosol	12.21	52.86
TraesCS3A01G307400.1	Wheat	cytosol	12.21	52.86
Zm00001d002259_P002	Maize	cytosol	24.09	52.52
OQU82368	Sorghum	plastid	26.07	39.5
TraesCS3A01G166400.2	Wheat	cytosol	15.51	22.71

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	EnsemblPlantsGene:Bra004775	EnsemblPlants:Bra004775.1	EnsemblPlants:Bra004775.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	GO:GO:0048500	InterPro:IPR009018	UniProt:M4CKP0	PFAM:PD009170	PFAM:PF02290
PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14	UniParc:UPI0002547B70	SEG:seg

Description

AT2G43640 (E=5e-046) | signal recognition particle 14 kDa family protein / SRP14 family protein

Coordinates

chrA05:-:1787457..1790076

Molecular Weight (calculated)

33806.3 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.576

Length

303 amino acids

Sequence
(BLAST)

001: MLLPNSSTLV GVVETDSHLI PGHQTHKITT NSALTTPLEV PAPTTFTHSH EVQSTSCSKI ENNLPMLAVE ETAHPQSHVM EEIPSKEIIL ETPQASENEQ
101: SIGHYSPIAN NLQQFHMERD LSPLTHGRDD GLVSAVDLRV DLFTVFDDLG DSREKKSLQC LTICKEYPSE VFSNGNLRSI PEVLLQLDPF LNELTSMFEK
201: SKEKGSVWVT LKRSSLKSKL QKRKLSSAGE SIEYRCLIRA TDAKKTISTS VGAKDHLRFQ ASYATILKAH MTALKKRERK DRKKSTEAEK KEGTSTTTKP
301: KKP

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.