CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037696.1-P	Field mustard	cytosol	100.0	100.0
CDY23384	Canola	cytosol	96.3	96.3
CDY30427	Canola	cytosol	90.74	91.59
CDX83471	Canola	cytosol	91.67	90.83
CDY44245	Canola	cytosol	90.74	89.91
AT2G43640.1	Thale cress	cytosol	87.96	78.51
VIT_05s0094g00400.t01	Wine grape	cytosol	68.52	69.81
KRH40004	Soybean	cytosol	75.93	68.33
GSMUA_Achr11P...	Banana	cytosol	66.67	61.02
KRH23789	Soybean	cytosol	68.52	57.36
PGSC0003DMT400042031	Potato	cytosol	63.89	55.2
CDY69452	Canola	cytosol	90.74	54.75
KRH33974	Soybean	cytosol, endoplasmic reticulum, nucleus	33.33	54.55
TraesCS2B01G490800.1	Wheat	cytosol	56.48	46.92
Os04t0623700-01	Rice	nucleus	56.48	46.21
TraesCS3D01G128100.1	Wheat	cytosol	29.63	45.71
Zm00001d002259_P002	Maize	cytosol	57.41	44.6
TraesCS2D01G467800.1	Wheat	cytosol	57.41	44.29
TraesCS3A01G472700.1	Wheat	cytosol	28.7	44.29
TraesCS2A01G467800.1	Wheat	nucleus	56.48	43.57
TraesCS1A01G132700.1	Wheat	cytosol, plastid	27.78	42.86
TraesCS3A01G092500.1	Wheat	cytosol, plastid	27.78	42.86
TraesCS7A01G549600.1	Wheat	cytosol, plastid	27.78	42.86
TraesCS7B01G031200.1	Wheat	cytosol	27.78	42.86
TraesCS7D01G219900.1	Wheat	cytosol	27.78	42.86
TraesCS1A01G083600.1	Wheat	cytosol	25.93	41.79
TraesCS1A01G199800.1	Wheat	cytosol, plastid	26.85	41.43
TraesCS3A01G307400.1	Wheat	cytosol	26.85	41.43
TraesCS4A01G371300.1	Wheat	cytosol	26.85	41.43
CDX79810	Canola	cytosol	90.74	32.34
OQU82368	Sorghum	plastid	58.33	31.5
TraesCS3A01G166400.2	Wheat	cytosol	31.48	16.43

Protein Annotations

MapMan:23.3.1.1.4	Gene3D:3.30.720.10	GO:A0A078GV68	UniProt:A0A078GV68	EnsemblPlants:CDY30425	ProteinID:CDY30425
ProteinID:CDY30425.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00045125001	InterPro:IPR009018
PFAM:PD009170	PFAM:PF02290	PANTHER:PTHR12013	SUPFAM:SSF54762	InterPro:Signal_recog_particle_SRP14	InterPro:Signal_recog_particle_SRP9/14
UniParc:UPI0002543E6B	SEG:seg	:	:	:	:

Description

BnaA04g25260DBnaA04g25260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV68]

Coordinates

chrLK032253:-:235832..237062

Molecular Weight (calculated)

12248.9 Da

IEP (calculated)

11.118

GRAVY (calculated)

-1.032

Length

108 amino acids

Sequence
(BLAST)

001: MFEKSKEKGS VWVTLKRSSL KSKLQKRKLS AAGESIEYRC LIRATDAKKT ISTSVGAKDH QRFQASYATI LKAHMTALKK RERKDRKKST EADKKESTSS
101: TTTKPKKL

Best Arabidopsis Sequence Match ( AT2G43640.2 )
(BLAST)

001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L

Arabidopsis Description

SRP14Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:O04421]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.