Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90499 | Sorghum | cytosol, mitochondrion, plastid | 72.15 | 71.25 |
| HORVU5Hr1G123210.2 | Barley | cytosol | 68.35 | 70.13 |
| TraesCS5B01G538500.1 | Wheat | plastid | 70.25 | 68.94 |
| TraesCS5D01G556800.1 | Wheat | mitochondrion | 67.72 | 67.72 |
| TraesCS4A01G325600.1 | Wheat | mitochondrion | 67.09 | 67.52 |
| Zm00001d012833_P002 | Maize | mitochondrion | 60.76 | 57.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 50.63 | 52.29 |
| Bra003821.1-P | Field mustard | mitochondrion | 34.81 | 46.22 |
| VIT_02s0025g03090.t01 | Wine grape | mitochondrion | 41.14 | 46.1 |
| AT1G73940.1 | Thale cress | mitochondrion | 42.41 | 44.37 |
| CDX96497 | Canola | mitochondrion | 42.41 | 42.41 |
| Bra015953.1-P | Field mustard | mitochondrion | 42.41 | 42.14 |
| CDX73027 | Canola | mitochondrion | 41.77 | 42.04 |
| CDY63166 | Canola | mitochondrion | 40.51 | 40.25 |
| GSMUA_Achr5P20420_001 | Banana | plastid | 39.87 | 38.41 |
| Os08t0360000-01 | Rice | mitochondrion | 20.25 | 24.24 |
Protein Annotations
| EMBL:AK068948 | EnsemblPlants:Os03t0852500-01 | EnsemblPlantsGene:Os03g0852500 | EntrezGene:4334812 | PANTHER:PTHR35110 | PANTHER:PTHR35110:SF2 |
| ProteinID:AAO20079.1 | ProteinID:ABF99942.1 | ProteinID:BAS87403.1 | RefSeq:XP_015632923.1 | SEG:seg | UniParc:UPI000000279F |
| UniProt:Q851X4 | MapMan:35.2 | : | : | : | : |
Description
Similar to NIR3. (Os03t0852500-01)
Coordinates
chr3:-:35897331..35899388
Molecular Weight (calculated)
16871.3 Da
IEP (calculated)
11.049
GRAVY (calculated)
-0.524
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MQFLRGGGGG SGGGGAGGMA WEVLKRHFSR KRAVDVRRIN PKVPKEEAVA ISGRLLQIFT DHGPLTVGNT WNHAKDAGIS GLNSKTHMKI LLKWMTGRRI
101: VKLNCVGTGN SKKFLYSPYS ADADKSEEAA AEELSKAAAS QGGKATKGQQ KKRATALH
101: VKLNCVGTGN SKKFLYSPYS ADADKSEEAA AEELSKAAAS QGGKATKGQQ KKRATALH
001: MWFAGGGGGL RKLCRASAIF DNEISYNSLL VRYMSRERAV NVRKINPKVP IQEAYAISNS LYDLFKLHGP LSVPNTWLRA QEAGVSGLNS KTHMKLLLKW
101: MRGKKMLKLI CNQVGSSKKF FHTVLPEDPL QEQPAAPIEN KKQAVKKKRS K
101: MRGKKMLKLI CNQVGSSKKF FHTVLPEDPL QEQPAAPIEN KKQAVKKKRS K
Arabidopsis Description
At1g73940/F2P9_19 [Source:UniProtKB/TrEMBL;Acc:Q9C9B5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.