Factsheet for Bra012645.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90452	Canola	cytosol	98.92	98.92
Bra040178.1-P	Field mustard	cytosol	82.01	82.61
AT4G17730.2	Thale cress	cytosol	74.1	78.63
Bra024989.1-P	Field mustard	cytosol	74.46	76.67
Bra022073.1-P	Field mustard	cytosol	73.38	76.4
Solyc06g062360.2.1	Tomato	cytosol	74.46	75.82
PGSC0003DMT400043211	Potato	cytosol	74.46	75.82
Solyc11g066910.1.1	Tomato	plastid	73.38	74.73
Solyc08g076540.2.1	Tomato	nucleus	73.02	74.36
VIT_02s0012g01850.t01	Wine grape	cytosol	73.02	74.09
Bra023256.1-P	Field mustard	cytosol	69.78	73.76
Solyc08g005200.2.1	Tomato	cytosol	72.3	73.63
PGSC0003DMT400038357	Potato	cytosol	72.3	73.63
KRH07229	Soybean	endoplasmic reticulum	71.58	72.89
KRH74378	Soybean	cytosol	71.22	72.53
KRH39570	Soybean	cytosol	70.86	72.16
KRH07476	Soybean	cytosol	70.86	72.16
TraesCS3A01G175000.1	Wheat	cytosol	68.7	68.95
PGSC0003DMT400084469	Potato	cytosol, golgi, mitochondrion, nucleus	15.47	68.25
TraesCS3D01G180500.1	Wheat	cytosol	67.99	68.23
GSMUA_Achr5P04090_001	Banana	cytosol	68.35	68.1
HORVU3Hr1G035380.1	Barley	cytosol	67.63	67.87
GSMUA_Achr7P04850_001	Banana	cytosol	66.55	67.77
EES02705	Sorghum	cytosol	67.27	66.79
Os01t0254900-01	Rice	plasma membrane	66.91	66.43
GSMUA_Achr4P20770_001	Banana	cytosol	63.31	64.47
GSMUA_Achr1P15580_001	Banana	cytosol	63.31	64.47
Bra006372.1-P	Field mustard	cytosol, plastid	63.67	64.13
PGSC0003DMT400068230	Potato	cytosol	69.06	63.37
Bra008592.1-P	Field mustard	cytosol, plastid	61.51	61.29
Zm00001d040286_P003	Maize	cytosol	59.71	55.52
Os02t0702800-01	Rice	cytosol	52.88	55.06
HORVU6Hr1G068640.1	Barley	cytosol	52.16	54.51
HORVU6Hr1G041590.1	Barley	cytosol	52.16	54.51
PGSC0003DMT400045973	Potato	cytosol	26.26	54.48
Zm00001d017756_P001	Maize	extracellular	45.32	50.81
EES05663	Sorghum	cytosol	48.92	50.75
TraesCS6D01G244100.2	Wheat	cytosol	51.44	48.97
TraesCS6A01G271000.1	Wheat	cytosol	46.76	48.33
TraesCS6B01G298100.3	Wheat	cytosol	47.48	47.65
Zm00001d008333_P003	Maize	cytosol	51.8	44.31
Zm00001d039536_P001	Maize	cytosol	37.41	39.54

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra012645	EnsemblPlants:Bra012645.1	EnsemblPlants:Bra012645.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4D835
PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025409AD	SEG:seg	:	:

Description

AT4G17730 (E=4e-100) SYP23, ATSYP23 | SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor

Coordinates

chrA03:+:22959234..22960571

Molecular Weight (calculated)

30646.4 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.298

Length

278 amino acids

Sequence
(BLAST)

001: MSFQDLEAGR GGRRLASSSN TNGGGGRQDT TQAVASGVFE INTAVSSFHR LVNTLGTPKD TPELRDKLHK TRLHIGELVK DTSVKLKEAS ETDHQRGVDQ
101: RKKIVDAKLA KDFQSVLKEF QKAQRLAAER ETVYAPLFTI SSPSSSFTSS EIDVSGDKHS EQRAVLVESK RQELVLLDNE IVFNEAIIEE REQGIQEIQQ
201: QIGEVHEIFK DLAVLVHDQG TMIDDIGTHI DNSQAATAQG RSHLAKASKT QRSSSTLMCW LMVIFGIVLL IVIIVLAV

Best Arabidopsis Sequence Match ( AT4G17730.2 )
(BLAST)

001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS

Arabidopsis Description

SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.