Factsheet for Bra023256.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93845	Canola	cytosol	96.2	96.2
KRH07476	Soybean	cytosol	78.71	75.82
Solyc06g062360.2.1	Tomato	cytosol	78.33	75.46
PGSC0003DMT400043211	Potato	cytosol	78.33	75.46
KRH07229	Soybean	endoplasmic reticulum	78.33	75.46
Solyc08g076540.2.1	Tomato	nucleus	78.33	75.46
PGSC0003DMT400038357	Potato	cytosol	77.57	74.73
Solyc11g066910.1.1	Tomato	plastid	77.57	74.73
KRH74378	Soybean	cytosol	77.19	74.36
Solyc08g005200.2.1	Tomato	cytosol	76.81	73.99
VIT_02s0012g01850.t01	Wine grape	cytosol	76.81	73.72
Bra024989.1-P	Field mustard	cytosol	74.52	72.59
KRH39570	Soybean	cytosol	75.29	72.53
Bra022073.1-P	Field mustard	cytosol	73.38	72.28
PGSC0003DMT400084469	Potato	cytosol, golgi, mitochondrion, nucleus	16.73	69.84
Bra012645.1-P	Field mustard	cytosol	73.76	69.78
Bra040178.1-P	Field mustard	cytosol	73.0	69.57
Os01t0254900-01	Rice	plasma membrane	71.86	67.5
EES02705	Sorghum	cytosol	71.1	66.79
HORVU3Hr1G035380.1	Barley	cytosol	69.96	66.43
TraesCS3A01G175000.1	Wheat	cytosol	69.96	66.43
GSMUA_Achr5P04090_001	Banana	cytosol	70.34	66.31
TraesCS3D01G180500.1	Wheat	cytosol	69.2	65.7
GSMUA_Achr7P04850_001	Banana	cytosol	68.06	65.57
PGSC0003DMT400068230	Potato	cytosol	72.62	63.04
GSMUA_Achr4P20770_001	Banana	cytosol	64.64	62.27
GSMUA_Achr1P15580_001	Banana	cytosol	64.64	62.27
Bra006372.1-P	Field mustard	cytosol, plastid	63.88	60.87
Bra008592.1-P	Field mustard	cytosol, plastid	62.74	59.14
Zm00001d040286_P003	Maize	cytosol	62.74	55.18
PGSC0003DMT400045973	Potato	cytosol	27.38	53.73
EES05663	Sorghum	cytosol	51.71	50.75
Zm00001d017756_P001	Maize	extracellular	47.15	50.0
Os02t0702800-01	Rice	cytosol	50.19	49.44
HORVU6Hr1G068640.1	Barley	cytosol	47.53	46.99
HORVU6Hr1G041590.1	Barley	cytosol	47.53	46.99
Zm00001d008333_P003	Maize	cytosol	54.75	44.31
TraesCS6D01G244100.2	Wheat	cytosol	49.05	44.18
TraesCS6A01G271000.1	Wheat	cytosol	44.49	43.49
TraesCS6B01G298100.3	Wheat	cytosol	44.87	42.6
Zm00001d039536_P001	Maize	cytosol	40.68	40.68
AT1G32270.1	Thale cress	nucleus	58.94	37.26

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra023256	EnsemblPlants:Bra023256.1	EnsemblPlants:Bra023256.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M4E3A5	PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025422E0	SEG:seg	:

Description

AT5G46860 (E=9e-081) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor

Coordinates

chrA09:-:20146842..20148367

Molecular Weight (calculated)

29380.1 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.335

Length

263 amino acids

Sequence
(BLAST)

001: MSFQDLEAGR KLIKGNKEGG TQAVASGIFE INTAVSTFQR LVNTLGTPKD TLDLRHKLHK TRLHIGQLVK DTSAKLKEAS QTDHHRDVSQ SKKIADAKLA
101: KDFEAVLKEF QKAQRVAAER ETSYTPFDPK TDLSSSEVDI GYDRSQEQRF LMESRRQEVV LLENEISFNE AVIEEREQGI QEVQQQIVEV NEIFKDLAVL
201: VHDQGAMIDD IGSHVENAHS STAQGRSHLV KASRTQRSNS SLMCLLMVIF GIVLLIVVIV LAA

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.