Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017756_P001 | Maize | extracellular | 84.33 | 91.13 |
| Os02t0702800-01 | Rice | cytosol | 75.75 | 76.03 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 74.25 | 74.81 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 73.88 | 74.44 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 75.0 | 68.84 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 69.03 | 68.77 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 70.9 | 68.59 |
| EES02705 | Sorghum | cytosol | 58.21 | 55.71 |
| KRH07476 | Soybean | cytosol | 56.34 | 55.31 |
| KRH74378 | Soybean | cytosol | 55.97 | 54.95 |
| KRH07229 | Soybean | endoplasmic reticulum | 55.97 | 54.95 |
| Solyc08g076540.2.1 | Tomato | nucleus | 55.6 | 54.58 |
| PGSC0003DMT400043211 | Potato | cytosol | 55.6 | 54.58 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 56.34 | 54.32 |
| Solyc06g062360.2.1 | Tomato | cytosol | 55.22 | 54.21 |
| KRH39570 | Soybean | cytosol | 55.22 | 54.21 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 55.22 | 54.01 |
| PGSC0003DMT400038357 | Potato | cytosol | 54.85 | 53.85 |
| Solyc08g005200.2.1 | Tomato | cytosol | 53.73 | 52.75 |
| Solyc11g066910.1.1 | Tomato | plastid | 53.73 | 52.75 |
| AT5G46860.1 | Thale cress | cytosol | 52.24 | 52.24 |
| Bra023256.1-P | Field mustard | cytosol | 50.75 | 51.71 |
| CDX93845 | Canola | cytosol | 50.75 | 51.71 |
| CDY43620 | Canola | cytosol | 51.49 | 51.69 |
| CDY33485 | Canola | cytosol | 51.87 | 51.48 |
| Bra024989.1-P | Field mustard | cytosol | 51.87 | 51.48 |
| Bra022073.1-P | Field mustard | cytosol | 51.12 | 51.31 |
| CDY01290 | Canola | cytosol | 51.49 | 51.3 |
| CDX77702 | Canola | cytosol | 51.87 | 51.29 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 52.61 | 51.09 |
| CDX78712 | Canola | cytosol, plastid | 52.61 | 51.09 |
| CDY37158 | Canola | cytosol | 50.75 | 50.94 |
| CDX70720 | Canola | cytosol, plastid | 51.87 | 50.36 |
| Bra040178.1-P | Field mustard | cytosol | 51.49 | 50.0 |
| CDY38084 | Canola | cytosol | 36.57 | 49.75 |
| CDX78796 | Canola | cytosol | 51.12 | 49.64 |
| CDY16976 | Canola | cytosol, plastid | 50.75 | 49.28 |
| CDY01478 | Canola | cytosol | 50.75 | 49.1 |
| Bra012645.1-P | Field mustard | cytosol | 50.75 | 48.92 |
| CDX90452 | Canola | cytosol | 50.37 | 48.56 |
| CDY60786 | Canola | cytosol | 49.25 | 48.35 |
| CDX69417 | Canola | cytosol, plastid | 50.0 | 48.03 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 50.0 | 48.03 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 49.63 | 47.67 |
| AT4G17730.2 | Thale cress | cytosol | 44.03 | 45.04 |
| PGSC0003DMT400068230 | Potato | cytosol | 50.75 | 44.88 |
| PGSC0003DMT400045973 | Potato | cytosol | 22.39 | 44.78 |
| Solyc06g072760.2.1 | Tomato | cytosol | 46.64 | 44.17 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 10.07 | 42.86 |
| PGSC0003DMT400069241 | Potato | cytosol | 34.7 | 34.96 |
| EER88100 | Sorghum | cytosol | 33.96 | 30.64 |
| AT1G32270.1 | Thale cress | nucleus | 36.57 | 23.56 |
| CDY03181 | Canola | cytosol | 21.27 | 21.84 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:8073164 | UniProt:C5Y0C8 | ncoils:Coil |
| EnsemblPlants:EES05663 | ProteinID:EES05663 | ProteinID:EES05663.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | EnsemblPlantsGene:SORBI_3004G269000 | SUPFAM:SSF47661 | unigene:Sbi.20282 |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001A85DF3 | RefSeq:XP_002452687.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:61325323..61330594
Molecular Weight (calculated)
29631.6 Da
IEP (calculated)
6.116
GRAVY (calculated)
-0.278
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFADLEAGA LRAPLGRKAR GGSNDARALV FQITTAVASY RRLLNSLGTP KDTLTLRDNL QKTSQNILQL AKDAKDKLQK AAEADRSTDT SADKRIADMK
101: LAKDFAATME EFRKLQSLAI QRETAYKPVV PQNAQSNYTT DDRSSESGNM PEQRALLAAK RQEVLQLDNE IVFNEAIIEE REQAIQDIQQ QIGEVNEVFK
201: DLATLVHSQG IIIEEINMNI EKSEVLTKEA KKEVTKAAKT QKSNSSLICL LMVIFGVVLL VVIIVLAA
101: LAKDFAATME EFRKLQSLAI QRETAYKPVV PQNAQSNYTT DDRSSESGNM PEQRALLAAK RQEVLQLDNE IVFNEAIIEE REQAIQDIQQ QIGEVNEVFK
201: DLATLVHSQG IIIEEINMNI EKSEVLTKEA KKEVTKAAKT QKSNSSLICL LMVIFGVVLL VVIIVLAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.