CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044851_P001	Maize	cytosol	63.3	65.51
TraesCS7A01G181800.1	Wheat	cytosol	36.36	41.22
EES02705	Sorghum	cytosol	38.05	40.36
EES05663	Sorghum	cytosol	30.64	33.96

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EntrezGene:8065502	UniProt:C5Z6Z6	ncoils:Coil
EnsemblPlants:EER88100	ProteinID:EER88100	ProteinID:EER88100.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF38
SMART:SM00397	InterPro:SNARE	EnsemblPlantsGene:SORBI_3010G090000	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001A89373	RefSeq:XP_002436733.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:7824046..7824939

Molecular Weight (calculated)

32518.9 Da

IEP (calculated)

5.729

GRAVY (calculated)

-0.223

Length

297 amino acids

Sequence
(BLAST)

001: MSFQDVCHDL EAGHPLPPRP PPPPPPRAVV AHCVFQINTK VSELRRLAHE LGAAGLGGNG DARVVRERIR RARADVTRLA RNTARRLADP AAAAAVGPNL
101: AADFQAALRE FQWVQDRIIE ADRQETAAAA AAARLAPPLM FPPPSPPSYG SPIRSSQLNN ANTNATAGAA DQQCNIQMQQ QQQLVESRRT QELALLDNEI
201: AFNEALVEER GREICKIQQE IAEINEIFVE LAKLVRDQQW NIDVVESNVE KAAMETSKAE EKLSKAALTH ETNSSMNCLL ITVFGLVMLI FALVFVA

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.