Factsheet for TraesCS7A01G181800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88100	Sorghum	cytosol	41.22	36.36
TraesCS3A01G175000.1	Wheat	cytosol	37.79	35.74
TraesCS6A01G271000.1	Wheat	cytosol	30.92	30.11
Zm00001d044851_P001	Maize	cytosol	32.44	29.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	ncoils:Coil	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	InterPro:IPR000727	PFAM:PF14523	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	EnsemblPlantsGene:TraesCS7A01G181800	EnsemblPlants:TraesCS7A01G181800.1	TIGR:cd15840
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:136342891..136343679

Molecular Weight (calculated)

27995.1 Da

IEP (calculated)

4.439

GRAVY (calculated)

0.047

Length

262 amino acids

Sequence
(BLAST)

001: MSFEDLEAGV VRPAPLPLAQ VVAHGVFQIN TKVVALRHLG DALGTPKDTP ALRVRLRSTR AEAAWLARIT SYNLKQAAAA GDGGTDGSTS PCSKLAMDFE
101: AALSELQKVQ QRIVAAERQV TSCAAAATSA GGTFAGHEQC TGQTQQQLQQ QLLSHGTEVE ELEAVVDERE RGIRETEQVI TEINEIFRDL YALVDEQACS
201: VDHVVCDIET AAATTGQAEE EVSALAVEAD RVSSSSSSSS TKYLLMFVVG IFLFIFLLVL VG

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.