CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006461_P001	Maize	mitochondrion	95.69	95.69
Zm00001d006152_P001	Maize	nucleus	40.23	94.59
Zm00001d008747_P001	Maize	nucleus	45.69	94.08
Os07t0508300-01	Rice	plasma membrane	89.37	89.37
TraesCS2D01G231700.1	Wheat	cytosol	86.49	87.25
TraesCS2A01G226200.1	Wheat	cytosol	85.92	86.67
TraesCS2B01G249500.1	Wheat	cytosol	85.63	86.38
GSMUA_Achr9P02630_001	Banana	mitochondrion	64.08	71.02
HORVU2Hr1G047840.1	Barley	cytosol	27.3	65.07
KRH42945	Soybean	endoplasmic reticulum	63.51	63.51
VIT_10s0003g02590.t01	Wine grape	cytosol	63.51	63.51
KRH59070	Soybean	cytosol	63.22	61.8
PGSC0003DMT400007954	Potato	cytosol	61.78	60.91
Zm00001d022555_P001	Maize	cytosol, mitochondrion	71.26	60.78
AT4G18060.1	Thale cress	cytosol, mitochondrion	61.21	60.68
CDY01515	Canola	cytosol, mitochondrion	60.06	59.54
Zm00001d022556_P001	Maize	cytosol	63.79	59.52
Solyc02g071330.2.1	Tomato	cytosol	54.02	59.31
CDX90424	Canola	mitochondrion	59.77	59.26
Bra012620.1-P	Field mustard	mitochondrion	59.77	59.26
EER91379	Sorghum	cytosol	50.0	47.15
OQU82036	Sorghum	cytosol	49.14	46.47
OQU92866	Sorghum	cytosol	43.68	40.0
GSMUA_Achr6P29510_001	Banana	cytosol	57.76	39.18

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	EntrezGene:8077486	InterPro:AH/BAR_dom_sf	UniProt:C5X9D6
ncoils:Coil	EnsemblPlants:EER99434	ProteinID:EER99434	ProteinID:EER99434.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	ProteinID:OQU89992.1	PFAM:PF14604	PRINTS:PR00499
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF5	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326
EnsemblPlantsGene:SORBI_3002G313600	SUPFAM:SSF103657	SUPFAM:SSF50044	unigene:Sbi.15102	UniParc:UPI0001A84058	RefSeq:XP_002462913.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:68696260..68700867

Molecular Weight (calculated)

39016.4 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.553

Length

348 amino acids

Sequence
(BLAST)

001: MEALRKQASK FKEQVAKQQQ AVIKQFSTTG YERSDSVVID EVELQRHQQL EKLYTSTRSG RDFQKDIVRA AEGLVSIGNK HIEVGTKFSE DCYRYGGENT
101: ASDEALGKAA SLYGGALRNI EKEYEDFNRI LSSQTIDPLR SMAMGAPLED ARGLAQRYSR MRHEAEILSA EIARRKARVR EAPIPEHTTK LQQSEAKMIE
201: HKASMAVLGK EAAAALAAVE SQQQRVTLQR LVGVVEAEKL FHLRLAAILD DVEAEMSSEK QRRESAPPII SLHKRAEKAQ YFLAEAMHNF NGTTEKELSL
301: IVGDYVVVRQ IAPNGWAEGE CRGKAGWFPA AYVERRENIP PNKVFPQA

Best Arabidopsis Sequence Match ( AT4G18060.1 )
(BLAST)

001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y

Arabidopsis Description

SH3P3SH3 domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.