CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90424	Canola	mitochondrion	98.86	98.86
AT4G18060.1	Thale cress	cytosol, mitochondrion	93.73	93.73
KRH42945	Soybean	endoplasmic reticulum	75.5	76.15
VIT_10s0003g02590.t01	Wine grape	cytosol	75.21	75.86
PGSC0003DMT400007954	Potato	cytosol	74.07	73.65
KRH59070	Soybean	cytosol	74.07	73.03
Solyc02g071330.2.1	Tomato	cytosol	64.96	71.92
GSMUA_Achr9P02630_001	Banana	mitochondrion	58.97	65.92
Zm00001d006152_P001	Maize	nucleus	26.78	63.51
Zm00001d008747_P001	Maize	nucleus	30.48	63.31
Os07t0508300-01	Rice	plasma membrane	61.54	62.07
EER99434	Sorghum	cytosol	59.54	60.06
Zm00001d006461_P001	Maize	mitochondrion	58.97	59.48
TraesCS2D01G231700.1	Wheat	cytosol	57.83	58.84
TraesCS2A01G226200.1	Wheat	cytosol	57.27	58.26
TraesCS2B01G249500.1	Wheat	cytosol	56.98	57.97
CDY12114	Canola	cytosol	16.81	49.58
CDX75452	Canola	mitochondrion	51.0	48.51
CDX69077	Canola	mitochondrion	51.0	48.51
CDX76295	Canola	cytosol	50.14	47.96
HORVU2Hr1G047840.1	Barley	cytosol	19.94	47.95
CDY17473	Canola	mitochondrion	50.14	47.83
CDY12115	Canola	cytosol	51.85	43.03
CDX90304	Canola	cytosol	51.28	42.65
Zm00001d022555_P001	Maize	cytosol, mitochondrion	45.87	39.46
GSMUA_Achr6P29510_001	Banana	cytosol	56.98	38.99
Zm00001d022556_P001	Maize	cytosol	40.74	38.34
CDY27149	Canola	cytosol	41.6	33.72
CDY12418	Canola	cytosol	41.6	33.72
CDY12310	Canola	nucleus	11.11	17.49

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDY01515	ProteinID:CDY01515
ProteinID:CDY01515.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00112538001
InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF5	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0004EF49EC	:	:	:	:	:

Description

BnaC07g35050D

Coordinates

chrLK031927:-:329165..331491

Molecular Weight (calculated)

39532.0 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.552

Length

351 amino acids

Sequence
(BLAST)

001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL EKLYRSTRSA KEFQRELIKA AETFTTIGLR HIEAGTKLAE DCCKYGTENS
101: QNIDENILAK AAAIYGDARK HVEKEQEDFN KLLSSQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH AAEVSKRQVR VKEAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAV LSDIEAEMVT EKQHKESAPP AIPTENSSEK TSYFLAEVVH PFSAASEKEL
301: DLYKGDYVVV RKVSESGWAE GECKGKAGWF PMAYIEKRQR LPTSNFAAEV Y

Best Arabidopsis Sequence Match ( AT4G18060.1 )
(BLAST)

001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y

Arabidopsis Description

SH3P3SH3 domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.