Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034642.1-P | Field mustard | cytosol | 94.28 | 98.3 |
| CDY17473 | Canola | mitochondrion | 95.91 | 95.65 |
| AT4G34660.1 | Thale cress | mitochondrion | 91.55 | 91.3 |
| CDX75452 | Canola | mitochondrion | 91.28 | 90.79 |
| CDX69077 | Canola | mitochondrion | 91.01 | 90.51 |
| Zm00001d024355_P001 | Maize | cytosol | 12.26 | 86.54 |
| KRH51472 | Soybean | cytosol | 76.29 | 75.47 |
| KRH29359 | Soybean | endoplasmic reticulum | 76.29 | 75.47 |
| KRH24385 | Soybean | endoplasmic reticulum | 75.75 | 74.93 |
| VIT_03s0038g00460.t01 | Wine grape | cytosol | 74.11 | 73.32 |
| Solyc01g110300.2.1 | Tomato | nucleus | 73.02 | 72.83 |
| PGSC0003DMT400008049 | Potato | mitochondrion | 73.02 | 72.43 |
| GSMUA_Achr5P19940_001 | Banana | cytosol | 72.75 | 71.97 |
| GSMUA_Achr11P... | Banana | cytosol | 71.66 | 70.89 |
| GSMUA_Achr8P11720_001 | Banana | cytosol | 70.3 | 69.54 |
| KRH60785 | Soybean | endoplasmic reticulum | 71.93 | 68.04 |
| EER91379 | Sorghum | cytosol | 67.57 | 67.21 |
| Os10t0512700-01 | Rice | plasma membrane | 67.57 | 67.03 |
| TraesCS1A01G177700.1 | Wheat | cytosol | 67.03 | 66.67 |
| TraesCS1B01G202500.1 | Wheat | cytosol | 66.76 | 66.4 |
| TraesCS1D01G176200.1 | Wheat | cytosol | 66.48 | 66.12 |
| TraesCS2B01G406500.2 | Wheat | cytosol | 66.48 | 65.95 |
| Zm00001d013860_P012 | Maize | cytosol | 67.3 | 65.87 |
| OQU82036 | Sorghum | cytosol | 65.94 | 65.76 |
| TraesCS2A01G388400.1 | Wheat | cytosol | 66.21 | 65.68 |
| TraesCS2D01G386200.1 | Wheat | cytosol | 66.21 | 65.68 |
| Os04t0539800-01 | Rice | plasma membrane | 65.12 | 64.77 |
| Zm00001d002810_P001 | Maize | plasma membrane | 64.85 | 64.67 |
| GSMUA_Achr11P... | Banana | cytosol | 65.4 | 64.34 |
| Zm00001d032465_P002 | Maize | cytosol | 67.57 | 63.43 |
| Zm00001d025955_P001 | Maize | cytosol, mitochondrion | 64.58 | 62.53 |
| CDY12114 | Canola | cytosol | 19.89 | 61.34 |
| CDX90304 | Canola | cytosol | 70.3 | 61.14 |
| CDY12115 | Canola | cytosol | 70.03 | 60.76 |
| HORVU1Hr1G047180.11 | Barley | cytosol | 61.58 | 60.75 |
| HORVU2Hr1G092430.1 | Barley | cytosol | 65.94 | 58.45 |
| CDX90424 | Canola | mitochondrion | 48.23 | 50.43 |
| CDY01515 | Canola | cytosol, mitochondrion | 47.96 | 50.14 |
| CDY12418 | Canola | cytosol | 45.5 | 38.57 |
| CDY27149 | Canola | cytosol | 45.23 | 38.34 |
| CDY12310 | Canola | nucleus | 13.08 | 21.52 |
Protein Annotations
| Gene3D:1.20.1270.60 | Gene3D:2.30.30.40 | MapMan:22.5.4.1.4 | InterPro:AH/BAR_dom_sf | EnsemblPlants:CDX76295 | ProteinID:CDX76295 |
| ProteinID:CDX76295.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00126662001 |
| InterPro:IPR001452 | InterPro:IPR027267 | PFAM:PF14604 | PFscan:PS50002 | PANTHER:PTHR44109 | PANTHER:PTHR44109:SF4 |
| InterPro:SH3-like_dom_sf | InterPro:SH3_domain | SMART:SM00326 | SUPFAM:SSF103657 | SUPFAM:SSF50044 | UniParc:UPI0004EE9808 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g11050D
Coordinates
chrLK031807:-:191369..193953
Molecular Weight (calculated)
41157.7 Da
IEP (calculated)
7.083
GRAVY (calculated)
-0.647
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAIRKQASR IREQVARQAV FKQFGGGGHG SGLSDDAELH HHQKLEKLYI STRAAKHYQR DIVRGVEGYI VTGSKQVEIG TKLSEDSRKY GSENTCTNGN
101: VLTRAALNYG RARAQMEKER GNMLKALGTQ VAEPLRSMVL GAPLEDARHL AQRYDRMRQE AEAQATEVAR RQAKARESQG NPDIFMKLES AEAKLQDLKS
201: NMSILGNEAA SALSSVEDQQ QKLTLERLIS MVESERGYHQ RVLQILDQLE GEMVYERQRI EAPITPSSTD NMPPPPSYEE ANGVFASSHM HDTPTDSMRY
301: FLGEVLFPYH GVTNVELSLS TGEYVVVRKV TGSGWAEGEC KGKAGWFPYE YIERRERVLA TKLSEVF
101: VLTRAALNYG RARAQMEKER GNMLKALGTQ VAEPLRSMVL GAPLEDARHL AQRYDRMRQE AEAQATEVAR RQAKARESQG NPDIFMKLES AEAKLQDLKS
201: NMSILGNEAA SALSSVEDQQ QKLTLERLIS MVESERGYHQ RVLQILDQLE GEMVYERQRI EAPITPSSTD NMPPPPSYEE ANGVFASSHM HDTPTDSMRY
301: FLGEVLFPYH GVTNVELSLS TGEYVVVRKV TGSGWAEGEC KGKAGWFPYE YIERRERVLA TKLSEVF
001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF
Arabidopsis Description
SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.