Factsheet for GSMUA_Achr5P19940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03240_001
GSMUA_Achr4P15230_001
GSMUA_Achr5P19940_001
GSMUA_Achr7P24520_001
GSMUA_Achr7P24530_001
GSMUA_Achr7P25140_001
GSMUA_Achr8P11170_001
GSMUA_Achr8P11720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr1P03240_001	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr8P11170_001	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr7P24520_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr7P24530_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr5P19940_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr8P11720_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr4P15230_001	AT5G11550.1	21798944
AT4G34660.1	GSMUA_Achr7P25140_001	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	89.22	89.22
GSMUA_Achr8P11720_001	Banana	cytosol	87.33	87.33
Zm00001d024355_P001	Maize	cytosol	12.13	86.54
VIT_03s0038g00460.t01	Wine grape	cytosol	80.05	80.05
Os10t0512700-01	Rice	plasma membrane	79.78	80.0
TraesCS1A01G177700.1	Wheat	cytosol	78.98	79.4
TraesCS1D01G176200.1	Wheat	cytosol	78.98	79.4
TraesCS1B01G202500.1	Wheat	cytosol	78.71	79.13
EER91379	Sorghum	cytosol	78.71	79.13
Zm00001d013860_P012	Maize	cytosol	79.51	78.67
KRH51472	Soybean	cytosol	77.63	77.63
VIT_18s0001g13530.t01	Wine grape	cytosol	76.55	77.17
Solyc01g110300.2.1	Tomato	nucleus	76.01	76.63
PGSC0003DMT400008049	Potato	mitochondrion	76.01	76.22
KRH29359	Soybean	endoplasmic reticulum	75.74	75.74
KRH24385	Soybean	endoplasmic reticulum	75.74	75.74
CDX75452	Canola	mitochondrion	73.58	73.98
Bra011550.1-P	Field mustard	mitochondrion	73.58	73.98
Zm00001d032465_P002	Maize	cytosol	77.9	73.91
CDX69077	Canola	mitochondrion	73.32	73.71
AT4G34660.1	Thale cress	mitochondrion	73.05	73.64
HORVU1Hr1G047180.11	Barley	cytosol	73.32	73.12
TraesCS2A01G388400.1	Wheat	cytosol	72.78	72.97
CDY17473	Canola	mitochondrion	72.24	72.83
CDX76295	Canola	cytosol	71.97	72.75
TraesCS2D01G386200.1	Wheat	cytosol	72.51	72.7
TraesCS2B01G406500.2	Wheat	cytosol	72.51	72.7
GSMUA_Achr11P...	Banana	cytosol	73.05	72.65
OQU82036	Sorghum	cytosol	71.7	72.28
Zm00001d002810_P001	Maize	plasma membrane	71.43	72.01
Os04t0539800-01	Rice	plasma membrane	71.43	71.82
Bra034642.1-P	Field mustard	cytosol	67.92	71.59
Solyc07g032110.2.1	Tomato	cytosol	71.16	71.35
PGSC0003DMT400035686	Potato	cytosol	70.89	71.08
KRH60785	Soybean	endoplasmic reticulum	72.51	69.33
Bra010715.1-P	Field mustard	cytosol	67.66	67.29
Zm00001d025955_P001	Maize	cytosol, mitochondrion	68.73	67.28
HORVU2Hr1G092430.1	Barley	cytosol	71.7	64.25
CDY12114	Canola	cytosol	19.95	62.18
CDX90304	Canola	cytosol	67.66	59.48
CDY12115	Canola	cytosol	66.85	58.63
GSMUA_Achr9P02630_001	Banana	mitochondrion	42.59	50.32
GSMUA_Achr9P02620_001	Banana	cytosol	6.47	45.28
GSMUA_Achr6P01240_001	Banana	cytosol	49.33	38.61
GSMUA_Achr6P29510_001	Banana	cytosol	42.05	30.41

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G19940_001	EnsemblPlants:GSMUA_Achr5P19940_001	EnsemblPlants:GSMUA_Achr5T19940_001	InterPro:IPR001452
InterPro:IPR027267	UniProt:M0T023	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4
InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000295899E

Description

src homology-3 domain protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19940_001]

Coordinates

chr5:-:21567006..21574676

Molecular Weight (calculated)

41336.1 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.485

Length

371 amino acids

Sequence
(BLAST)

001: MEAIRKQASK FREQVARQQQ AVFKQFGGGG YGSSDSIFSD AAEYQQHQKL EKLYISTRAA KHFQRDIVRG VEGYIVTGSK QVEIGNKLSD DSRKYGVENT
101: CTSGNTLSKA ALCYARARAQ MENERGNLLK ALGSQVAEPL RAMVMGAPLE DARHLAQRYD RVRQEAEAQA IEVSKRQIKV RETVGSGDNI SKLEAAEAKL
201: QELKSSMAVL GKEAVAAMTA VEAQQQRLTL QRLIAMVESE RTYHQKVLQI LEQLEAEMLS ERQRIEASPS PASENFMPPP PSYEEANGMF TNSTVDGLTE
301: SVEYFLAEVI HSYQAETDVE LNLSVGDYVV VRKLSNNGWA EGECKGKAGW FPSVYIERRE RVLASKIVQI L

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.