Factsheet for PGSC0003DMT400035686

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g032110.2.1	Tomato	cytosol	96.49	96.49
Zm00001d024355_P001	Maize	cytosol	11.35	80.77
PGSC0003DMT400008049	Potato	mitochondrion	73.78	73.78
VIT_18s0001g13530.t01	Wine grape	cytosol	72.16	72.55
GSMUA_Achr11P...	Banana	cytosol	71.35	71.16
GSMUA_Achr5P19940_001	Banana	cytosol	71.08	70.89
GSMUA_Achr8P11720_001	Banana	cytosol	68.65	68.46
Os10t0512700-01	Rice	plasma membrane	68.11	68.11
EER91379	Sorghum	cytosol	67.84	68.02
TraesCS1A01G177700.1	Wheat	cytosol	67.3	67.48
GSMUA_Achr11P...	Banana	cytosol	67.84	67.29
TraesCS1B01G202500.1	Wheat	cytosol	67.03	67.21
TraesCS1D01G176200.1	Wheat	cytosol	66.76	66.94
Zm00001d013860_P012	Maize	cytosol	67.3	66.4
TraesCS2A01G388400.1	Wheat	cytosol	64.86	64.86
TraesCS2B01G406500.2	Wheat	cytosol	64.86	64.86
TraesCS2D01G386200.1	Wheat	cytosol	64.59	64.59
Zm00001d032465_P002	Maize	cytosol	67.57	63.94
OQU82036	Sorghum	cytosol	63.24	63.59
Zm00001d002810_P001	Maize	plasma membrane	62.7	63.04
Os04t0539800-01	Rice	plasma membrane	61.89	62.06
HORVU1Hr1G047180.11	Barley	cytosol	62.16	61.83
Zm00001d025955_P001	Maize	cytosol, mitochondrion	61.62	60.16
HORVU2Hr1G092430.1	Barley	cytosol	64.59	57.73
PGSC0003DMT400007954	Potato	cytosol	51.08	53.54
PGSC0003DMT400077295	Potato	cytosol	46.76	47.79

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:102598633	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	InterPro:BAR_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR001452	InterPro:IPR004148	InterPro:IPR027267	UniProt:M1B2N8
PFAM:PF03114	PFAM:PF14604	EnsemblPlantsGene:PGSC0003DMG400013729	PGSC:PGSC0003DMG400013729	EnsemblPlants:PGSC0003DMT400035686	PFscan:PS50002
PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657
SUPFAM:SSF50044	UniParc:UPI0002967170	RefSeq:XP_006352058.1	SEG:seg	:	:

Description

Clathrin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013729]

Coordinates

chr7:+:18926661..18931375

Molecular Weight (calculated)

41343.9 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.582

Length

370 amino acids

Sequence
(BLAST)

001: MDSIRKQATK LREQVAKQQQ AVFKQFSSGL GGPDNSVTDE VELQQHQKLE KLYISTRAGK HFQRDIVRGV EGYIITASKQ IEIGTRLSED SRKYGAENTC
101: TSGSTLSKAA LSYSRAQGEI EKEREDLLKS LGTQVAEPLR AMVVGAPLED ARHLAQRYDR VRQEAEAQAI DISRRQAKVR ESNGNPESVS KMEAAEAKLK
201: DLKSNVATLG KEASTSMATV EAQQQRLTLQ RLIAMVEAQR HYHQRVLQIL DQLEAEMMLE RQRIEASPSS ATDNSMPPPP SYTEVNGGLH FKSYDGFIDG
301: TTYFLAEVVH PYEAESDVEL TLLIGDYVVV RKVSNNGWAE GECKGKGGWF PFGYVERRER ILATKVAEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.