Factsheet for Os04t0539800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681400-01
Os03t0248000-02
Os03t0258500-01
Os03t0644000-01
Os04t0539800-01
Os05t0559350-00
Os10t0163100-01
Os10t0512700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	Os03t0248000-02	AT2G31260.1	24249832
AT4G34660.1	Os10t0163100-01	AT2G31260.1	24249832
AT4G34660.1	Os01t0681400-01	AT3G61710.1	24249832
AT4G34660.1	Os03t0258500-01	AT3G61710.1	24249832
AT4G34660.1	Os03t0644000-01	AT3G61710.1	24249832
AT4G34660.1	Os04t0539800-01	AT4G34660.1	24249832
AT4G34660.1	Os10t0512700-01	AT4G34660.1	24249832
AT4G34660.1	Os05t0559350-00	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82036	Sorghum	cytosol	87.53	87.77
Zm00001d002810_P001	Maize	plasma membrane	86.72	86.96
TraesCS2D01G386200.1	Wheat	cytosol	86.45	86.22
TraesCS2A01G388400.1	Wheat	cytosol	86.45	86.22
TraesCS2B01G406500.2	Wheat	cytosol	86.18	85.95
Zm00001d025955_P001	Maize	cytosol, mitochondrion	83.74	81.53
HORVU2Hr1G092430.1	Barley	cytosol	85.64	76.33
GSMUA_Achr5P19940_001	Banana	cytosol	71.82	71.43
KRH51472	Soybean	cytosol	71.27	70.89
Os10t0512700-01	Rice	plasma membrane	70.73	70.54
GSMUA_Achr11P...	Banana	cytosol	70.46	70.08
VIT_03s0038g00460.t01	Wine grape	cytosol	70.46	70.08
KRH29359	Soybean	endoplasmic reticulum	69.65	69.27
GSMUA_Achr8P11720_001	Banana	cytosol	69.38	69.0
AT4G34660.1	Thale cress	mitochondrion	68.29	68.48
Solyc01g110300.2.1	Tomato	nucleus	68.02	68.21
KRH24385	Soybean	endoplasmic reticulum	68.56	68.19
PGSC0003DMT400008049	Potato	mitochondrion	68.02	67.84
VIT_18s0001g13530.t01	Wine grape	cytosol	67.48	67.66
CDX69077	Canola	mitochondrion	67.21	67.21
Bra011550.1-P	Field mustard	mitochondrion	67.21	67.21
CDX75452	Canola	mitochondrion	67.21	67.21
CDY17473	Canola	mitochondrion	65.04	65.22
CDX76295	Canola	cytosol	64.77	65.12
Bra034642.1-P	Field mustard	cytosol	62.06	65.06
KRH60785	Soybean	endoplasmic reticulum	67.75	64.43
Solyc07g032110.2.1	Tomato	cytosol	62.6	62.43
PGSC0003DMT400035686	Potato	cytosol	62.06	61.89
Bra010715.1-P	Field mustard	cytosol	61.25	60.59
CDY12114	Canola	cytosol	18.7	57.98
CDX90304	Canola	cytosol	61.25	53.55
CDY12115	Canola	cytosol	60.7	52.96
Os07t0508300-01	Rice	plasma membrane	46.34	49.14
Os03t0266700-01	Rice	plasma membrane	45.53	42.64

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	EntrezGene:4336533	InterPro:AH/BAR_dom_sf	EMBL:AK240927
ProteinID:BAS90285.1	ProteinID:CAE02784.2	ncoils:Coil	ProteinID:EEE61421.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	EnsemblPlantsGene:Os04g0539800	EnsemblPlants:Os04t0539800-01	PFAM:PF00018
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF2	UniProt:Q7XR93	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000021C65C	RefSeq:XP_015633415.1	SEG:seg

Description

Src homology-3 domain containing protein. (Os04t0539800-01)

Coordinates

chr4:-:27015657..27019587

Molecular Weight (calculated)

41221.7 Da

IEP (calculated)

5.979

GRAVY (calculated)

-0.546

Length

369 amino acids

Sequence
(BLAST)

001: MEALWKQASR LKEQVSRQGV FKPFGAAYGN SENAFTDESE VNLHQRLEKL YLSTRAAKHF QRDIVRGVEG YIVTGSKQVD IGNKLSDDSQ KYGTGNTCTS
101: DNTLSKAAMY YGKARSLMEK ERGNMLRAFG TQVAEPLRAM VMGAPLEDAR HLAQRYDRMR QEAEAQAVEV SRRQNRVRES APNGDVITKL EAAEYKLEEL
201: KSSMVGLGKE AVAAMAAVEA QQQRLTLQRL IAMVEAERAY HQRVLEILDH LEQEMVSERQ KIEAPPTPSA ENYMAQPPPS YDEVNGMFAS SSVDDSVTSV
301: DFFLGEALDS FKAESESELN LSAGDIVIVR KISTNGWAEG ECKGKAGWFP HGYIERRERV LASKVPHIF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.