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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG95650
KRH04111
KRH19544
KRH24385
KRH28060
KRH29359
KRH30023
KRH32171
KRH51472
KRH52713
KRH57384
KRH60785
KRH62041
KRH62897
KRH67361
KRH77376

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G34660.1 KRG95650 AT2G31260.1 24249832
AT4G34660.1 KRH19544 AT2G31260.1 24249832
AT4G34660.1 KRH32171 AT2G31260.1 24249832
AT4G34660.1 KRH67361 AT2G31260.1 24249832
AT4G34660.1 KRH04111 AT2G45170.1 24249832
AT4G34660.1 KRH28060 AT2G45170.1 24249832
AT4G34660.1 KRH57384 AT2G45170.1 24249832
AT4G34660.1 KRH77376 AT2G45170.1 24249832
AT4G34660.1 KRH30023 AT3G61710.1 24249832
AT4G34660.1 KRH62897 AT3G61710.1 24249832
AT4G34660.1 KRH24385 AT4G34660.1 24249832
AT4G34660.1 KRH29359 AT4G34660.1 24249832
AT4G34660.1 KRH51472 AT4G34660.1 24249832
AT4G34660.1 KRH60785 AT4G34660.1 24249832
AT4G34660.1 KRH52713 AT5G11550.1 21798944
AT4G34660.1 KRH62041 AT5G11550.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29359 Soybean endoplasmic reticulum 95.69 95.69
Zm00001d024355_P001 Maize cytosol 12.67 90.38
KRH51472 Soybean cytosol 88.95 88.95
VIT_03s0038g00460.t01 Wine grape cytosol 80.86 80.86
KRH60785 Soybean endoplasmic reticulum 83.83 80.15
AT4G34660.1 Thale cress mitochondrion 78.98 79.62
Solyc01g110300.2.1 Tomato nucleus 78.98 79.62
PGSC0003DMT400008049 Potato mitochondrion 78.71 78.92
Bra011550.1-P Field mustard mitochondrion 77.63 78.05
CDX69077 Canola mitochondrion 77.63 78.05
CDX75452 Canola mitochondrion 77.63 78.05
GSMUA_Achr11P... Banana cytosol 76.55 76.55
CDY17473 Canola mitochondrion 75.47 76.09
CDX76295 Canola cytosol 74.93 75.75
GSMUA_Achr5P19940_001 Banana cytosol 75.74 75.74
Bra010715.1-P Field mustard cytosol 75.47 75.07
Bra034642.1-P Field mustard cytosol 71.16 75.0
GSMUA_Achr8P11720_001 Banana cytosol 72.78 72.78
TraesCS1A01G177700.1 Wheat cytosol 72.24 72.63
TraesCS1B01G202500.1 Wheat cytosol 71.97 72.36
Os10t0512700-01 Rice plasma membrane 71.97 72.16
TraesCS1D01G176200.1 Wheat cytosol 71.7 72.09
EER91379 Sorghum cytosol 71.7 72.09
GSMUA_Achr11P... Banana cytosol 71.43 71.05
Zm00001d013860_P012 Maize cytosol 71.7 70.93
OQU82036 Sorghum cytosol 68.73 69.29
TraesCS2B01G406500.2 Wheat cytosol 68.46 68.65
Os04t0539800-01 Rice plasma membrane 68.19 68.56
Zm00001d032465_P002 Maize cytosol 72.24 68.54
TraesCS2A01G388400.1 Wheat cytosol 68.19 68.38
TraesCS2D01G386200.1 Wheat cytosol 68.19 68.38
Zm00001d002810_P001 Maize plasma membrane 67.66 68.21
CDY12115 Canola cytosol 75.47 66.19
HORVU1Hr1G047180.11 Barley cytosol 66.31 66.13
CDX90304 Canola cytosol 75.2 66.11
Zm00001d025955_P001 Maize cytosol, mitochondrion 66.58 65.17
CDY12114 Canola cytosol 19.95 62.18
HORVU2Hr1G092430.1 Barley cytosol 67.92 60.87
KRH42945 Soybean endoplasmic reticulum 53.1 56.61
KRH59070 Soybean cytosol 53.37 55.62
KRH76411 Soybean cytosol 46.9 48.07
KRH39714 Soybean cytosol 46.36 47.51
Protein Annotations
Gene3D:1.20.1270.60EntrezGene:100791309Gene3D:2.30.30.40MapMan:22.5.4.1.4EMBL:ACUP02007175InterPro:AH/BAR_dom_sf
ncoils:CoilEnsemblPlantsGene:GLYMA_12G038100GO:GO:0003674GO:GO:0005488GO:GO:0005515UniProt:I1LPY2
InterPro:IPR001452InterPro:IPR027267EnsemblPlants:KRH24385ProteinID:KRH24385ProteinID:KRH24385.1PFAM:PF14604
PFscan:PS50002PANTHER:PTHR44109PANTHER:PTHR44109:SF4InterPro:SH3-like_dom_sfInterPro:SH3_domainSMART:SM00326
SUPFAM:SSF103657SUPFAM:SSF50044UniParc:UPI000233CD67SEG:seg::
Description
hypothetical protein
Coordinates
chr12:+:2746700..2750168
Molecular Weight (calculated)
41020.8 Da
IEP (calculated)
7.149
GRAVY (calculated)
-0.470
Length
371 amino acids
Sequence
(BLAST)
001: MDAIRKQASK LREQVARQQQ AVLKQFGGGG YGGSDNVVTD GVELQLHQKL EKLYISTRAG KHYQRDIVRG VEGYIVTGSK QVEIGTKLSE DSRKYGAENT
101: CTSGNTLSRA ALSFARAHAQ MEKERGNLLK ALGTQVAEPL RAMVVGAPLE DARHLAQRYD RMRQEAEAQA IEVSKRQAKV REMPPSAENT MKLEAAEAKL
201: QDLKTNMTIL GKEAAAALAA VEAQQQRLTL QRIIAMVEAE RAYHQIVLQI LDQLEGEVTS ERRQIETPST PSLDNTMPPP PSYEEVNGVY ASPTHNGSTD
301: SMGYFLGEVL FPYSAVSEVE LNLSVGDYVV VRKVTNSGWA EGECKGRAGW FPFSYIERRE RVLASKVTEV F
Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)
001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF
Arabidopsis Description
SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.