CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007400.2.1	Tomato	cytosol	89.43	92.44
PGSC0003DMT400032488	Potato	cytosol	91.06	91.8
KRH04111	Soybean	cytosol	95.12	91.41
Bra040738.1-P	Field mustard	cytosol	86.99	90.68
CDY68526	Canola	cytosol	86.99	90.68
PGSC0003DMT400012239	Potato	cytosol	88.62	89.34
CDY40540	Canola	cytosol	85.37	88.24
KRH57384	Soybean	cytosol	95.12	87.31
VIT_02s0154g00390.t01	Wine grape	cytosol	91.06	86.15
Bra012710.1-P	Field mustard	cytosol	82.93	85.71
Bra038481.1-P	Field mustard	cytosol, mitochondrion	55.28	82.93
Bra000376.1-P	Field mustard	cytosol	80.49	81.15
CDX83397	Canola	cytosol	80.49	81.15
AT3G60640.1	Thale cress	cytosol	79.67	80.99
KRH36460	Soybean	cytosol, mitochondrion	78.05	80.67
KRH11438	Soybean	cytosol, mitochondrion	78.05	80.67
CDY56249	Canola	cytosol	79.67	80.33
CDX95634	Canola	cytosol	79.67	80.33
KRH25368	Soybean	cytosol	78.05	80.0
Bra003310.1-P	Field mustard	cytosol	78.86	79.51
KRH28060	Soybean	cytosol	99.19	79.22
KRH56143	Soybean	cytosol	77.24	79.17
AT2G45170.1	Thale cress	cytosol	78.05	78.69
CDY32262	Canola	cytosol	77.24	77.87
KRH51096	Soybean	cytosol	77.24	73.64
KRH02062	Soybean	cytosol	76.42	72.87
GSMUA_Achr8P11170_001	Banana	cytosol	73.17	72.58
KRH12706	Soybean	cytosol	41.46	69.86
AT4G16520.3	Thale cress	extracellular	67.48	68.59
CDY37030	Canola	cytosol	44.72	65.48
GSMUA_Achr11P...	Banana	cytosol	61.79	61.29
CDX90515	Canola	plastid	84.55	56.83
CDY09685	Canola	plastid	85.37	56.76
Solyc08g078820.2.1	Tomato	cytosol, plastid	89.43	55.56
KRH69161	Soybean	cytosol	47.97	48.36
KRH31741	Soybean	cytosol	47.15	47.54
CDY50852	Canola	cytosol	86.99	37.41

Protein Annotations

EntrezGene:100818315	MapMan:19.3.3.1	Gene3D:3.10.20.90	EMBL:ACUP02000669	InterPro:Atg8-like	EnsemblPlantsGene:GLYMA_01G210200
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0006950
GO:GO:0006995	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605
GO:GO:0009987	GO:GO:0009991	UniProt:I1J9W7	EnsemblPlants:KRH77376	ProteinID:KRH77376	ProteinID:KRH77376.1
PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	SUPFAM:SSF54236	UniParc:UPI0001BA8572	InterPro:Ubiquitin-like_domsf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54156553..54159825

Molecular Weight (calculated)

14217.1 Da

IEP (calculated)

8.759

GRAVY (calculated)

-0.393

Length

123 amino acids

Sequence
(BLAST)

001: MARNYFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAERS DIPSIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPTGA IMSAIYDEKK
101: DEDGFLYVTY SGENTFGDLI SIQ

Best Arabidopsis Sequence Match ( AT1G62040.1 )
(BLAST)

001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV

Arabidopsis Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.