Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038481.1-P | Field mustard | cytosol, mitochondrion | 59.5 | 87.8 |
| CDY40540 | Canola | cytosol | 73.55 | 74.79 |
| CDY68526 | Canola | cytosol | 72.73 | 74.58 |
| Bra040738.1-P | Field mustard | cytosol | 72.73 | 74.58 |
| CDY32262 | Canola | cytosol | 74.38 | 73.77 |
| Bra012710.1-P | Field mustard | cytosol | 71.9 | 73.11 |
| Solyc08g007400.2.1 | Tomato | cytosol | 69.42 | 70.59 |
| PGSC0003DMT400032488 | Potato | cytosol | 69.42 | 68.85 |
| PGSC0003DMT400012239 | Potato | cytosol | 69.42 | 68.85 |
| KRH77376 | Soybean | cytosol | 68.59 | 67.48 |
| AT2G45170.1 | Thale cress | cytosol | 67.77 | 67.21 |
| VIT_15s0048g00660.t01 | Wine grape | cytosol | 68.59 | 66.94 |
| AT3G60640.1 | Thale cress | cytosol | 66.12 | 66.12 |
| KRH04111 | Soybean | cytosol | 69.42 | 65.62 |
| VIT_02s0154g00390.t01 | Wine grape | cytosol | 68.59 | 63.85 |
| KRH57384 | Soybean | cytosol | 68.59 | 61.94 |
| AT1G62040.1 | Thale cress | cytosol | 60.33 | 61.34 |
| AT4G04620.3 | Thale cress | cytosol | 59.5 | 59.02 |
| GSMUA_Achr8P11170_001 | Banana | cytosol | 59.5 | 58.06 |
| AT4G21980.2 | Thale cress | cytosol | 61.98 | 54.74 |
| KRH28060 | Soybean | cytosol | 68.59 | 53.9 |
| GSMUA_Achr11P... | Banana | cytosol | 51.24 | 50.0 |
| CDX90515 | Canola | plastid | 73.55 | 48.63 |
| CDY09685 | Canola | plastid | 73.55 | 48.11 |
| AT3G15580.1 | Thale cress | cytosol | 45.45 | 47.83 |
| AT2G05630.2 | Thale cress | cytosol | 61.98 | 45.73 |
| Solyc08g078820.2.1 | Tomato | cytosol, plastid | 69.42 | 42.42 |
| AT3G06420.1 | Thale cress | cytosol | 38.84 | 39.5 |
| CDY50852 | Canola | cytosol | 72.73 | 30.77 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | EntrezGene:827351 | UniProt:A0A1P8B738 | ProteinID:ANM67394.1 | ArrayExpress:AT4G16520 |
| EnsemblPlantsGene:AT4G16520 | RefSeq:AT4G16520 | TAIR:AT4G16520 | RefSeq:AT4G16520-TAIR-G | EnsemblPlants:AT4G16520.3 | Symbol:ATG8F |
| Unigene:At.28608 | InterPro:Atg8-like | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | RefSeq:NP_001329226.1 |
| PFAM:PF02991 | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF39 | SUPFAM:SSF54236 | UniParc:UPI00084934B2 | InterPro:Ubiquitin-like_domsf |
Description
ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
Coordinates
chr4:-:9306663..9308478
Molecular Weight (calculated)
13666.9 Da
IEP (calculated)
6.780
GRAVY (calculated)
0.248
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHVATCFMI HMVKMTLEMM ISTHLYFCGI QVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P
101: DDDGFLYVTY SGENTFGFGS P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.