Factsheet for PGSC0003DMT400012239

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032488	Potato	cytosol	91.8	91.8
Bra040738.1-P	Field mustard	cytosol	86.89	89.83
CDY68526	Canola	cytosol	86.89	89.83
CDY40540	Canola	cytosol	86.89	89.08
KRH77376	Soybean	cytosol	89.34	88.62
Bra012710.1-P	Field mustard	cytosol	85.25	87.39
KRH04111	Soybean	cytosol	90.98	86.72
VIT_02s0154g00390.t01	Wine grape	cytosol	90.98	85.38
CDX95634	Canola	cytosol	83.61	83.61
PGSC0003DMT400057469	Potato	cytosol	81.15	83.19
PGSC0003DMT400037386	Potato	cytosol	81.15	83.19
Bra000376.1-P	Field mustard	cytosol	82.79	82.79
CDX83397	Canola	cytosol	82.79	82.79
KRH57384	Soybean	cytosol	90.16	82.09
AT3G60640.1	Thale cress	cytosol	81.15	81.82
Bra038481.1-P	Field mustard	cytosol, mitochondrion	54.92	81.71
CDY56249	Canola	cytosol	81.15	81.15
Bra003310.1-P	Field mustard	cytosol	80.33	80.33
AT2G45170.1	Thale cress	cytosol	78.69	78.69
CDY32262	Canola	cytosol	77.05	77.05
PGSC0003DMT400013025	Potato	cytosol	76.23	75.61
PGSC0003DMT400042494	Potato	cytosol	75.41	74.8
KRH28060	Soybean	cytosol	90.16	71.43
GSMUA_Achr8P11170_001	Banana	cytosol	72.13	70.97
AT4G16520.3	Thale cress	extracellular	68.85	69.42
CDY37030	Canola	cytosol	45.08	65.48
Solyc08g078820.2.1	Tomato	cytosol, plastid	98.36	60.61
GSMUA_Achr11P...	Banana	cytosol	60.66	59.68
CDX90515	Canola	plastid	86.89	57.92
CDY09685	Canola	plastid	87.7	57.84
PGSC0003DMT400013320	Potato	cytosol	46.72	47.9
CDY50852	Canola	cytosol	86.89	37.06

Protein Annotations

EntrezGene:102603200	MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:Atg8-like	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	UniProt:M1A0Y8	PFAM:PF02991	EnsemblPlantsGene:PGSC0003DMG400004802	PGSC:PGSC0003DMG400004802	EnsemblPlants:PGSC0003DMT400012239
PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	SUPFAM:SSF54236	UniParc:UPI000296A3BC	InterPro:Ubiquitin-like_domsf	RefSeq:XP_006355472.1
RefSeq:XP_006355473.1	SEG:seg	:	:	:	:

Description

Microtubule associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004802]

Coordinates

chr8:+:52468105..52472028

Molecular Weight (calculated)

13874.7 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.387

Length

122 amino acids

Sequence
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYADRI PVIVEKAEKS DIPNIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF IDNVLPPTGA IMSGIYDEKK
101: DDDGFLYVTY SGENTFGGLS EL

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.