Factsheet for Bra003310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000376.1-P	Field mustard	cytosol	96.72	96.72
AT2G45170.1	Thale cress	cytosol	93.44	93.44
Bra040738.1-P	Field mustard	cytosol	81.15	83.9
Solyc08g007400.2.1	Tomato	cytosol	80.33	82.35
Bra012710.1-P	Field mustard	cytosol	79.51	81.51
PGSC0003DMT400032488	Potato	cytosol	81.15	81.15
PGSC0003DMT400012239	Potato	cytosol	80.33	80.33
Bra038481.1-P	Field mustard	cytosol, mitochondrion	53.28	79.27
KRH77376	Soybean	cytosol	79.51	78.86
VIT_15s0048g00660.t01	Wine grape	cytosol	78.69	77.42
KRH04111	Soybean	cytosol	81.15	77.34
VIT_02s0154g00390.t01	Wine grape	cytosol	81.97	76.92
Bra013172.1-P	Field mustard	cytosol	73.77	75.63
Bra029509.1-P	Field mustard	cytosol	72.13	73.33
KRH57384	Soybean	cytosol	80.33	73.13
CDY37030	Canola	cytosol	50.0	72.62
Bra013578.1-P	Field mustard	cytosol	71.31	71.31
GSMUA_Achr8P11170_001	Banana	cytosol	72.13	70.97
Bra019407.1-P	Field mustard	cytosol	72.13	70.97
Bra021303.1-P	Field mustard	cytosol	46.72	68.67
KRH28060	Soybean	cytosol	80.33	63.64
GSMUA_Achr11P...	Banana	cytosol	61.48	60.48
Bra027227.1-P	Field mustard	cytosol	50.82	53.91
Solyc08g078820.2.1	Tomato	cytosol, plastid	80.33	49.49
Bra020749.1-P	Field mustard	cytosol	47.54	48.74
Bra001197.1-P	Field mustard	cytosol	47.54	48.74

Protein Annotations

EnsemblPlants:Bra003310.1	EnsemblPlants:Bra003310.1-P	EnsemblPlantsGene:Bra003310	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	ncoils:Coil	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39
PFAM:PF02991	SUPFAM:SSF54236	UniParc:UPI0002541621	UniProt:M4CGH7	MapMan:19.3.3.1	:

Description

AT2G45170 (E=4e-062) ATATG8E, ATG8E | AtATG8e; microtubule binding

Coordinates

chrA07:-:12539407..12540441

Molecular Weight (calculated)

13860.6 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.413

Length

122 amino acids

Sequence
(BLAST)

001: MNKGSSFKLD NDFEKRKAEA GRILEKYPDR IPVIVEKAEK SDIPDIDKKK YLVPSDLTVG QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG EIMSSVYEDK
101: KDQDGFLYIT YSGENTFGAS SI

Best Arabidopsis Sequence Match ( AT2G45170.2 )
(BLAST)

001: MNKGSIFKMD NDFEKRKAEA GRIREKYPDR IPVIVEKAEK SEVPNIDKKK YLVPSDLTVG QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG ELMSSVYEDK
101: KDEDGFLYIT YSGENTFGAS SI

Arabidopsis Description

ATG8EAutophagy-related protein 8e [Source:UniProtKB/Swiss-Prot;Acc:Q8S926]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.