Factsheet for Bra029509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16657	Canola	cytosol	99.17	99.17
CDX94567	Canola	cytosol	97.5	97.5
AT4G04620.3	Thale cress	cytosol	92.5	90.98
Bra013578.1-P	Field mustard	cytosol	92.5	90.98
Bra019407.1-P	Field mustard	cytosol	92.5	89.52
GSMUA_Achr5P02890_001	Banana	cytosol	88.33	89.08
KRH36460	Soybean	cytosol, mitochondrion	85.0	85.71
KRH11438	Soybean	cytosol, mitochondrion	85.0	85.71
Bra013172.1-P	Field mustard	cytosol	80.83	81.51
Bra038481.1-P	Field mustard	cytosol, mitochondrion	53.33	78.05
Bra040738.1-P	Field mustard	cytosol	76.67	77.97
KRH51096	Soybean	cytosol	83.33	77.52
KRH02062	Soybean	cytosol	83.33	77.52
Bra012710.1-P	Field mustard	cytosol	75.0	75.63
Bra021303.1-P	Field mustard	cytosol	51.67	74.7
Bra000376.1-P	Field mustard	cytosol	74.17	72.95
Bra003310.1-P	Field mustard	cytosol	73.33	72.13
Bra027227.1-P	Field mustard	cytosol	55.83	58.26
Bra001197.1-P	Field mustard	cytosol	53.33	53.78
Bra020749.1-P	Field mustard	cytosol	51.67	52.1

Protein Annotations

EnsemblPlants:Bra029509.1	EnsemblPlants:Bra029509.1-P	EnsemblPlantsGene:Bra029509	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF47	PFAM:PF02991
SUPFAM:SSF54236	UniParc:UPI0002542698	UniProt:M4EL42	MapMan:19.3.3.1	:	:

Description

AT4G21980 (E=3e-059) APG8A, ATG8A | APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase

Coordinates

chrA09:+:17464917..17465810

Molecular Weight (calculated)

13629.4 Da

IEP (calculated)

8.412

GRAVY (calculated)

-0.353

Length

120 amino acids

Sequence
(BLAST)

001: MAKNSFKLSN PLETRMAEST RIREKYQDRV PVIVEKAEQS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAA LMSAIYEEHK
101: DEDGFLYMTY SGENTFGSAC

Best Arabidopsis Sequence Match ( AT4G21980.1 )
(BLAST)

001: MAKSSFKISN PLEARMSESS RIREKYPDRI PVIVEKAGQS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAA LMSAIYEEHK
101: DEDGFLYMTY SGENTFGSLT VA

Arabidopsis Description

APG8AAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.