Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029509.1-P | Field mustard | cytosol | 90.98 | 92.5 |
| CDY16657 | Canola | cytosol | 90.98 | 92.5 |
| CDX94567 | Canola | cytosol | 90.16 | 91.67 |
| GSMUA_Achr5P02890_001 | Banana | cytosol | 81.97 | 84.03 |
| KRH11438 | Soybean | cytosol, mitochondrion | 79.51 | 81.51 |
| KRH36460 | Soybean | cytosol, mitochondrion | 79.51 | 81.51 |
| AT1G62040.1 | Thale cress | cytosol | 78.69 | 80.67 |
| AT4G21980.2 | Thale cress | cytosol | 87.7 | 78.1 |
| KRH02062 | Soybean | cytosol | 78.69 | 74.42 |
| KRH51096 | Soybean | cytosol | 78.69 | 74.42 |
| AT2G45170.1 | Thale cress | cytosol | 70.49 | 70.49 |
| AT3G60640.1 | Thale cress | cytosol | 68.03 | 68.59 |
| AT4G16520.3 | Thale cress | extracellular | 59.02 | 59.5 |
| AT3G15580.1 | Thale cress | cytosol | 54.1 | 57.39 |
| AT2G05630.2 | Thale cress | cytosol | 76.23 | 56.71 |
| AT3G06420.1 | Thale cress | cytosol | 50.82 | 52.1 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | EntrezGene:825794 | UniProt:A0A178V3P6 | ProteinID:AAD29776.1 | EMBL:AB073176 |
| ProteinID:AEE82404.1 | ProteinID:AEE82405.1 | EMBL:AK227679 | ProteinID:ANM67912.1 | ArrayExpress:AT4G04620 | EnsemblPlantsGene:AT4G04620 |
| RefSeq:AT4G04620 | TAIR:AT4G04620 | RefSeq:AT4G04620-TAIR-G | EnsemblPlants:AT4G04620.3 | Symbol:ATG8B | EMBL:AY084859 |
| InterPro:Atg8-like | EMBL:BT006385 | ProteinID:CAB80827.1 | GO:GO:0000421 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0006810 | GO:GO:0006914 | GO:GO:0006950 |
| GO:GO:0006995 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009605 |
| GO:GO:0009987 | GO:GO:0009991 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0031410 | RefSeq:NP_001329707.1 |
| RefSeq:NP_192371.1 | RefSeq:NP_849298.1 | ProteinID:OAP00015.1 | PFAM:PF02991 | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF47 |
| UniProt:Q9XEB5 | SUPFAM:SSF54236 | UniParc:UPI000005EC7F | InterPro:Ubiquitin-like_domsf | : | : |
Description
ATG8BAutophagy-related protein 8b [Source:UniProtKB/Swiss-Prot;Acc:Q9XEB5]
Coordinates
chr4:-:2328442..2330590
Molecular Weight (calculated)
13880.8 Da
IEP (calculated)
8.925
GRAVY (calculated)
-0.289
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNSFKLSN PLEMRMAEST RIRAKYPERV PVIVEKAGQS DVPDIDKKKY LVPADLTIGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAA LMSAIYEEHK
101: DEDGFLYMTY SGENTFGGSF YC
101: DEDGFLYMTY SGENTFGGSF YC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.