Factsheet for AT1G62040.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07250	Canola	cytosol	90.76	90.76
Solyc02g080590.2.1	Tomato	cytosol	90.76	87.8
PGSC0003DMT400042494	Potato	cytosol	90.76	87.8
Os07t0512200-01	Rice	cytosol	86.55	86.55
TraesCS2D01G229900.1	Wheat	cytosol	84.03	84.03
TraesCS2B01G274200.1	Wheat	cytosol	84.03	84.03
TraesCS2A01G224000.1	Wheat	cytosol	84.03	84.03
EER99442	Sorghum	cytosol	83.19	83.19
VIT_10s0116g01700.t01	Wine grape	cytosol	84.87	82.79
Bra021303.1-P	Field mustard	cytosol	57.14	81.93
AT4G04620.3	Thale cress	cytosol	80.67	78.69
CDY24873	Canola	cytosol	59.66	75.53
AT4G21980.2	Thale cress	cytosol	85.71	74.45
AT3G60640.1	Thale cress	cytosol	75.63	74.38
AT2G45170.1	Thale cress	cytosol	73.11	71.31
HORVU2Hr1G046860.2	Barley	cytosol, plastid	84.03	62.5
AT2G05630.2	Thale cress	cytosol	84.03	60.98
AT4G16520.3	Thale cress	extracellular	61.34	60.33
AT3G15580.1	Thale cress	cytosol	53.78	55.65
AT3G06420.1	Thale cress	cytosol	52.1	52.1
Zm00001d006474_P002	Maize	nucleus	80.67	45.93

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	EntrezGene:842499	UniProt:A0A178W309	ProteinID:AAC28521.1	EMBL:AB073177
ProteinID:AEE33916.1	EMBL:AK118776	ArrayExpress:AT1G62040	EnsemblPlantsGene:AT1G62040	RefSeq:AT1G62040	TAIR:AT1G62040
RefSeq:AT1G62040-TAIR-G	EnsemblPlants:AT1G62040.1	TAIR:AT1G62040.1	Symbol:ATG8C	EMBL:AY085871	InterPro:Atg8-like
EMBL:BT005441	GO:GO:0000421	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005856
GO:GO:0005874	GO:GO:0006810	GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
GO:GO:0015031	GO:GO:0016020	GO:GO:0031410	RefSeq:NP_176395.1	ProteinID:OAP12909.1	PFAM:PF02991
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR10969	PANTHER:PTHR10969:SF43
UniProt:Q8S927	SUPFAM:SSF54236	UniParc:UPI000000C659	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]

Coordinates

chr1:+:22932760..22934440

Molecular Weight (calculated)

13733.6 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.385

Length

119 amino acids

Sequence
(BLAST)

001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.