Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g080590.2.1 | Tomato | cytosol | 100.0 | 100.0 |
| AT1G62040.1 | Thale cress | cytosol | 87.8 | 90.76 |
| PGSC0003DMT400013025 | Potato | cytosol | 89.43 | 89.43 |
| GSMUA_Achr5P02890_001 | Banana | cytosol | 86.18 | 89.08 |
| Os07t0512200-01 | Rice | cytosol | 86.18 | 89.08 |
| KRH11438 | Soybean | cytosol, mitochondrion | 85.37 | 88.24 |
| KRH36460 | Soybean | cytosol, mitochondrion | 85.37 | 88.24 |
| PGSC0003DMT400057469 | Potato | cytosol | 85.37 | 88.24 |
| PGSC0003DMT400037386 | Potato | cytosol | 85.37 | 88.24 |
| TraesCS2A01G224000.1 | Wheat | cytosol | 84.55 | 87.39 |
| TraesCS2D01G229900.1 | Wheat | cytosol | 84.55 | 87.39 |
| TraesCS2B01G274200.1 | Wheat | cytosol | 84.55 | 87.39 |
| EER99442 | Sorghum | cytosol | 83.74 | 86.55 |
| CDY07250 | Canola | cytosol | 81.3 | 84.03 |
| VIT_10s0116g01700.t01 | Wine grape | cytosol | 82.93 | 83.61 |
| KRH51096 | Soybean | cytosol | 84.55 | 80.62 |
| KRH02062 | Soybean | cytosol | 84.55 | 80.62 |
| Bra021303.1-P | Field mustard | cytosol | 52.85 | 78.31 |
| PGSC0003DMT400032488 | Potato | cytosol | 76.42 | 77.05 |
| PGSC0003DMT400012239 | Potato | cytosol | 74.8 | 75.41 |
| CDY24873 | Canola | cytosol | 55.28 | 72.34 |
| HORVU2Hr1G046860.2 | Barley | cytosol, plastid | 84.55 | 65.0 |
| PGSC0003DMT400013320 | Potato | cytosol | 51.22 | 52.94 |
| Zm00001d006474_P002 | Maize | nucleus | 82.11 | 48.33 |
Protein Annotations
| EntrezGene:102597736 | MapMan:19.3.3.1 | Gene3D:3.10.20.90 | InterPro:Atg8-like | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | UniProt:M1BD47 | PFAM:PF02991 | EnsemblPlantsGene:PGSC0003DMG400016479 | PGSC:PGSC0003DMG400016479 | EnsemblPlants:PGSC0003DMT400042494 |
| PANTHER:PTHR10969 | PANTHER:PTHR10969:SF47 | SUPFAM:SSF54236 | UniParc:UPI0002769034 | InterPro:Ubiquitin-like_domsf | RefSeq:XP_006348122.1 |
| RefSeq:XP_006348123.1 | SEG:seg | : | : | : | : |
Description
Gaba(A) receptor-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016479]
Coordinates
chr2:+:36397057..36399878
Molecular Weight (calculated)
14053.9 Da
IEP (calculated)
9.280
GRAVY (calculated)
-0.427
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSSFKLEH PLERRQSESS RIREKYPDRI PVIVEKAEKS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGASKAIFVF VKNTLPPTAS LMSAIYEENK
101: DEDGFLYMTY SGENTFGFVE LGN
101: DEDGFLYMTY SGENTFGFVE LGN
001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV
101: DEDGFLYMTY SGENTFGLV
Arabidopsis Description
ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.