Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g068060.2.1 | Tomato | cytosol | 94.12 | 94.12 |
| VIT_07s0005g02200.t01 | Wine grape | cytosol | 81.51 | 78.23 |
| GSMUA_Achr5P27270_001 | Banana | cytosol | 74.79 | 74.79 |
| KRH69161 | Soybean | cytosol | 69.75 | 68.03 |
| KRH31741 | Soybean | cytosol | 69.75 | 68.03 |
| TraesCS5A01G158000.1 | Wheat | plasma membrane | 65.55 | 67.24 |
| HORVU5Hr1G049440.1 | Barley | cytosol | 65.55 | 67.24 |
| TraesCS5B01G155700.1 | Wheat | cytosol | 64.71 | 66.38 |
| TraesCS5D01G163400.1 | Wheat | cytosol | 60.5 | 66.06 |
| Bra001197.1-P | Field mustard | cytosol | 65.55 | 65.55 |
| CDX74104 | Canola | cytosol | 65.55 | 65.55 |
| AT3G06420.1 | Thale cress | cytosol | 65.55 | 65.55 |
| CDY08051 | Canola | cytosol | 64.71 | 64.71 |
| CDY05263 | Canola | cytosol | 63.87 | 63.87 |
| Bra020749.1-P | Field mustard | cytosol | 63.87 | 63.87 |
| CDY24693 | Canola | cytosol | 63.03 | 63.03 |
| OQU75649 | Sorghum | cytosol | 50.42 | 54.05 |
| PGSC0003DMT400042494 | Potato | cytosol | 52.94 | 51.22 |
| PGSC0003DMT400037386 | Potato | cytosol | 50.42 | 50.42 |
| PGSC0003DMT400057469 | Potato | cytosol | 50.42 | 50.42 |
| PGSC0003DMT400013025 | Potato | cytosol | 51.26 | 49.59 |
| PGSC0003DMT400012239 | Potato | cytosol | 47.9 | 46.72 |
| PGSC0003DMT400032488 | Potato | cytosol | 47.9 | 46.72 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | ProteinID:AFW90604 | ProteinID:AFW90604.1 | InterPro:Atg8-like | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | EMBL:JX576248 | UniProt:M1A2N7 | PFAM:PF02991 | EnsemblPlantsGene:PGSC0003DMG400005198 |
| PGSC:PGSC0003DMG400005198 | EnsemblPlants:PGSC0003DMT400013320 | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF25 | SUPFAM:SSF54236 | UniParc:UPI0002961CBF |
| InterPro:Ubiquitin-like_domsf | : | : | : | : | : |
Description
Autophagy 8h [Source:PGSC_GENE;Acc:PGSC0003DMG400005198]
Coordinates
chr1:-:63220827..63226940
Molecular Weight (calculated)
13658.3 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.533
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKTFKDEFS YEERLAESRD IIAKYPDRVP VVAERYSKTD LPEMEKKKYL VPRDMSVGQF NHILSGRLQL APGKALFIFV NNTLPQTTSL IETVYESSKD
101: KDGFLYMCYS SEKTFGGHS
101: KDGFLYMCYS SEKTFGGHS
001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG
101: DGFVYMCYSS EKTFG
Arabidopsis Description
ATG8IAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.