Factsheet for TraesCS5A01G158000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 24996626

gfp PMID: 24996626 doi

D Pei, W Zhang, H Sun, X Wei, J Yue, H Wang

School of Life Sciences, Tianjin Normal University, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin, 300387, China

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT3G15580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT3G15580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G049440.1	Barley	cytosol	96.55	96.55
TraesCS5B01G155700.1	Wheat	cytosol	95.69	95.69
TraesCS5D01G163400.1	Wheat	cytosol	89.66	95.41
GSMUA_Achr5P27270_001	Banana	cytosol	75.86	73.95
AT3G15580.1	Thale cress	cytosol	70.69	71.3
CDY30087	Canola	cytosol	70.69	71.3
Bra027227.1-P	Field mustard	cytosol	70.69	71.3
CDX97685	Canola	cytosol	70.69	71.3
OQU75649	Sorghum	cytosol	63.79	66.67
Solyc01g068060.2.1	Tomato	cytosol	68.1	66.39
VIT_07s0005g02200.t01	Wine grape	cytosol	70.69	66.13
PGSC0003DMT400013320	Potato	cytosol	67.24	65.55
KRH69161	Soybean	cytosol	67.24	63.93
KRH31741	Soybean	cytosol	66.38	63.11
AT3G06420.1	Thale cress	cytosol	62.93	61.34
CDX74104	Canola	cytosol	62.07	60.5
Bra001197.1-P	Field mustard	cytosol	62.07	60.5
CDY08051	Canola	cytosol	61.21	59.66
Bra020749.1-P	Field mustard	cytosol	60.34	58.82
CDY05263	Canola	cytosol	60.34	58.82
CDY24693	Canola	cytosol	59.48	57.98
TraesCS2A01G224000.1	Wheat	cytosol	56.03	54.62
TraesCS2A01G468300.1	Wheat	cytosol	53.45	52.1

Protein Annotations

EnsemblPlants:TraesCS5A01G158000.1	EnsemblPlantsGene:TraesCS5A01G158000	Gene3D:3.10.20.90	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969
PANTHER:PTHR10969:SF25	PFAM:PF02991	SUPFAM:SSF54236	TIGR:cd01611	MapMan:19.3.3.1	:

Description

No Description!

Coordinates

chr5A:+:338232403..338236791

Molecular Weight (calculated)

13420.4 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.274

Length

116 amino acids

Sequence
(BLAST)

001: MKSFKKEFTL EERANESAAM IAKYPGRIPV IVERFSRSKL PEMEKRKYLV PCDMPVGQFI FILRSRLHLS PGTALFVFVR NTLPQTANLM GSVYDSYKDK
101: QDGFLYMCYS SEKTFG

Best Arabidopsis Sequence Match ( AT3G15580.1 )
(BLAST)

001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG

Arabidopsis Description

ATG8IAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.