CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15580.1	CDX70151	AT5G05410.1	18552202
AT3G15580.1	CDX98843	AT5G05410.1	18552202
AT3G15580.1	CDY04950	AT5G05410.1	18552202
AT3G15580.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027227.1-P	Field mustard	cytosol	100.0	100.0
CDY30087	Canola	cytosol	100.0	100.0
AT3G15580.1	Thale cress	cytosol	94.78	94.78
TraesCS5A01G158000.1	Wheat	plasma membrane	71.3	70.69
HORVU5Hr1G049440.1	Barley	cytosol	70.43	69.83
TraesCS5B01G155700.1	Wheat	cytosol	69.57	68.97
CDY08051	Canola	cytosol	71.3	68.91
CDX74104	Canola	cytosol	70.43	68.07
TraesCS5D01G163400.1	Wheat	cytosol	63.48	66.97
CDY05263	Canola	cytosol	67.83	65.55
CDY24693	Canola	cytosol	66.09	63.87
CDX93087	Canola	cytosol	59.13	57.14
CDY50946	Canola	cytosol	58.26	56.3
OQU75649	Sorghum	cytosol	53.91	55.86
CDY16657	Canola	cytosol	58.26	55.83
CDY07250	Canola	cytosol	57.39	55.46
CDX94567	Canola	cytosol	57.39	55.0
CDY40540	Canola	cytosol	56.52	54.62
CDY68526	Canola	cytosol	55.65	54.24
CDX98722	Canola	cytosol	57.39	53.23
CDX79116	Canola	cytosol	55.65	52.46
CDX82891	Canola	cytosol	55.65	52.46
CDX82890	Canola	cytosol	55.65	51.61
CDY56249	Canola	cytosol	53.91	50.82
CDX83397	Canola	cytosol	53.91	50.82
CDX95634	Canola	cytosol	53.04	50.0
CDY32262	Canola	cytosol	52.17	49.18
CDX94071	Canola	cytosol	57.39	48.18
CDY37030	Canola	cytosol	33.04	45.24
CDY31453	Canola	cytosol	51.3	43.7
CDY24873	Canola	cytosol	35.65	43.62
CDX90515	Canola	plastid	55.65	34.97
CDY09685	Canola	plastid	55.65	34.59
CDY50852	Canola	cytosol	55.65	22.38

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	GO:A0A078GY06	UniProt:A0A078GY06	InterPro:Atg8-like	EnsemblPlants:CDX97685
ProteinID:CDX97685	ProteinID:CDX97685.1	ProteinID:CDY30087.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00104930001	PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF25	SUPFAM:SSF54236	UniParc:UPI0002547A16
InterPro:Ubiquitin-like_domsf	:	:	:	:	:

Description

BnaA05g23940DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY06]

Coordinates

chrLK031900:-:980922..981951

Molecular Weight (calculated)

13229.0 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.208

Length

115 amino acids

Sequence
(BLAST)

001: MKSFKEELTL DERLAESREI IAKYPTRIPV IAEKYSKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSIYETYKDE
101: DGFVYMCYSS EKTFG

Best Arabidopsis Sequence Match ( AT3G15580.1 )
(BLAST)

001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG

Arabidopsis Description

ATG8IAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.