Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005852.1-P | |
| Bra009112.1-P | |
| Bra028759.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15580.1 | Bra005852.1-P | AT5G05410.1 | 18552202 |
| AT3G15580.1 | Bra009112.1-P | AT5G05410.1 | 18552202 |
| AT3G15580.1 | Bra028759.1-P | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30087 | Canola | cytosol | 100.0 | 100.0 |
| CDX97685 | Canola | cytosol | 100.0 | 100.0 |
| AT3G15580.1 | Thale cress | cytosol | 94.78 | 94.78 |
| TraesCS5A01G158000.1 | Wheat | plasma membrane | 71.3 | 70.69 |
| HORVU5Hr1G049440.1 | Barley | cytosol | 70.43 | 69.83 |
| TraesCS5B01G155700.1 | Wheat | cytosol | 69.57 | 68.97 |
| Bra001197.1-P | Field mustard | cytosol | 70.43 | 68.07 |
| TraesCS5D01G163400.1 | Wheat | cytosol | 63.48 | 66.97 |
| Bra020749.1-P | Field mustard | cytosol | 67.83 | 65.55 |
| Bra013172.1-P | Field mustard | cytosol | 59.13 | 57.14 |
| OQU75649 | Sorghum | cytosol | 53.91 | 55.86 |
| Bra029509.1-P | Field mustard | cytosol | 58.26 | 55.83 |
| Bra040738.1-P | Field mustard | cytosol | 55.65 | 54.24 |
| Bra019407.1-P | Field mustard | cytosol | 57.39 | 53.23 |
| Bra012710.1-P | Field mustard | cytosol | 54.78 | 52.94 |
| Bra013578.1-P | Field mustard | cytosol | 55.65 | 52.46 |
| Bra003310.1-P | Field mustard | cytosol | 53.91 | 50.82 |
| Bra000376.1-P | Field mustard | cytosol | 53.91 | 50.82 |
| Bra038481.1-P | Field mustard | cytosol, mitochondrion | 35.65 | 50.0 |
| Bra021303.1-P | Field mustard | cytosol | 34.78 | 48.19 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | InterPro:Atg8-like | EnsemblPlantsGene:Bra027227 | EnsemblPlants:Bra027227.1 | EnsemblPlants:Bra027227.1-P |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | UniProt:M4EEL5 | PFAM:PF02991 | PANTHER:PTHR10969 |
| PANTHER:PTHR10969:SF25 | SUPFAM:SSF54236 | UniParc:UPI0002547A16 | InterPro:Ubiquitin-like_domsf | : | : |
Description
AT3G15580 (E=4e-059) ATG8I, APG8H | APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule binding
Coordinates
chrA05:+:19802908..19803639
Molecular Weight (calculated)
13229.0 Da
IEP (calculated)
7.343
GRAVY (calculated)
-0.208
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSFKEELTL DERLAESREI IAKYPTRIPV IAEKYSKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSIYETYKDE
101: DGFVYMCYSS EKTFG
101: DGFVYMCYSS EKTFG
001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG
101: DGFVYMCYSS EKTFG
Arabidopsis Description
ATG8IAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.