Factsheet for Bra013172.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93087	Canola	cytosol	100.0	100.0
CDY50946	Canola	cytosol	99.16	99.16
KRH25368	Soybean	cytosol	91.6	90.83
KRH56143	Soybean	cytosol	90.76	90.0
GSMUA_Achr4P21280_001	Banana	cytosol	87.39	87.39
VIT_12s0059g00660.t01	Wine grape	cytosol	88.24	86.78
GSMUA_Achr2P12710_001	Banana	cytosol	86.55	86.55
GSMUA_Achr10P...	Banana	cytosol	85.71	85.71
Solyc03g031650.2.1	Tomato	cytosol	86.55	83.74
PGSC0003DMT400013025	Potato	cytosol	85.71	82.93
Bra040738.1-P	Field mustard	cytosol	81.51	82.2
Bra029509.1-P	Field mustard	cytosol	81.51	80.83
Bra019407.1-P	Field mustard	cytosol	83.19	79.84
Bra013578.1-P	Field mustard	cytosol	81.51	79.51
Bra012710.1-P	Field mustard	cytosol	78.15	78.15
Bra021303.1-P	Field mustard	cytosol	53.78	77.11
Bra000376.1-P	Field mustard	cytosol	76.47	74.59
Bra003310.1-P	Field mustard	cytosol	75.63	73.77
Bra038481.1-P	Field mustard	cytosol, mitochondrion	50.42	73.17
AT2G05630.2	Thale cress	cytosol	95.8	69.51
Bra027227.1-P	Field mustard	cytosol	57.14	59.13
Bra001197.1-P	Field mustard	cytosol	52.1	52.1
Bra020749.1-P	Field mustard	cytosol	48.74	48.74

Protein Annotations

EnsemblPlants:Bra013172.1	EnsemblPlants:Bra013172.1-P	EnsemblPlantsGene:Bra013172	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF43	PFAM:PF02991
SUPFAM:SSF54236	UniParc:UPI000254097B	UniProt:M4D9L2	MapMan:19.3.3.1	:	:

Description

AT2G05630 (E=3e-062) ATG8D | autophagy 8d (APG8d)

Coordinates

chrA03:-:20055115..20056324

Molecular Weight (calculated)

13725.6 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.334

Length

119 amino acids

Sequence
(BLAST)

001: MAISSFKQEH PLEKRQAEAS RIRDKYPDRI PVIVERAEKS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LSPEKAIFIF VKNILPPTAA IMSAIYEEHK
101: DEDGFLYMSY SGENTFGIF

Best Arabidopsis Sequence Match ( AT2G05630.1 )
(BLAST)

001: MAISSFKHEH PLEKRQAEAA RIREKYPDRI PVIVERAEKS DVPDIDRKKY LVPADLTVGQ FVYVVRKRIK LSPEKAIFIF VKNILPPTAA IMSAIYEEHK
101: DEDGFLYMSY SGENTFGIFF

Arabidopsis Description

ATG8DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:F4IHC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.