Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013025 | Potato | cytosol | 96.75 | 96.75 |
| Solyc02g080590.2.1 | Tomato | cytosol | 89.43 | 89.43 |
| KRH25368 | Soybean | cytosol | 86.99 | 89.17 |
| Solyc07g064680.2.1 | Tomato | plastid | 86.18 | 89.08 |
| GSMUA_Achr4P21280_001 | Banana | cytosol | 86.18 | 89.08 |
| KRH56143 | Soybean | cytosol | 86.18 | 88.33 |
| VIT_12s0059g00660.t01 | Wine grape | cytosol | 86.18 | 87.6 |
| GSMUA_Achr2P12710_001 | Banana | cytosol | 84.55 | 87.39 |
| GSMUA_Achr10P... | Banana | cytosol | 84.55 | 87.39 |
| CDX93087 | Canola | cytosol | 83.74 | 86.55 |
| Bra013172.1-P | Field mustard | cytosol | 83.74 | 86.55 |
| CDY50946 | Canola | cytosol | 82.93 | 85.71 |
| Solyc08g007400.2.1 | Tomato | cytosol | 76.42 | 78.99 |
| Solyc10g006270.2.1 | Tomato | cytosol | 85.37 | 71.43 |
| AT2G05630.2 | Thale cress | cytosol | 82.11 | 61.59 |
| Solyc01g068060.2.1 | Tomato | cytosol | 48.78 | 50.42 |
| Solyc08g078820.2.1 | Tomato | cytosol, plastid | 76.42 | 47.47 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | InterPro:Atg8-like | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006914 | GO:GO:0006950 | GO:GO:0006995 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009605 | GO:GO:0009987 | GO:GO:0009991 | UniProt:K4BFD7 |
| PFAM:PF02991 | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF43 | SUPFAM:SSF54236 | EnsemblPlantsGene:Solyc03g031650.2 | EnsemblPlants:Solyc03g031650.2.1 |
| UniParc:UPI000276928B | InterPro:Ubiquitin-like_domsf | SEG:seg | : | : | : |
Description
Autophagy-related protein 8d [Source:Projected from Arabidopsis thaliana (AT2G05630) UniProtKB/Swiss-Prot;Acc:Q9SL04]
Coordinates
chr3:-:4103918..4106855
Molecular Weight (calculated)
14186.1 Da
IEP (calculated)
7.345
GRAVY (calculated)
-0.370
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSSFKVEH PLERRQAESS RIREKYPDRI PVIVERAEKS DISDIDKKKY LVPADLTVGQ FVYVVRKRIN LSAEKAIYVF VKNILPPTAA LMSAIYEENK
101: DEDGFLYMTY SGENTFGFLE LCN
101: DEDGFLYMTY SGENTFGFLE LCN
001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV
101: DEDGFLYMTY SGENTFGLV
Arabidopsis Description
ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.