Factsheet for Solyc07g064680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057469	Potato	cytosol	100.0	100.0
GSMUA_Achr4P21280_001	Banana	cytosol	97.48	97.48
GSMUA_Achr2P12710_001	Banana	cytosol	96.64	96.64
GSMUA_Achr10P...	Banana	cytosol	95.8	95.8
Solyc03g031650.2.1	Tomato	cytosol	89.08	86.18
Solyc02g080590.2.1	Tomato	cytosol	88.24	85.37
Solyc08g007400.2.1	Tomato	cytosol	84.03	84.03
Solyc10g006270.2.1	Tomato	cytosol	99.16	80.27
Solyc08g078820.2.1	Tomato	cytosol, plastid	84.03	50.51
Solyc01g068060.2.1	Tomato	cytosol	47.9	47.9

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:Atg8-like	UniProt:F1JYZ5	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
EMBL:JF304784	PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF43	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc07g064680.2
EnsemblPlants:Solyc07g064680.2.1	UniParc:UPI000202157F	InterPro:Ubiquitin-like_domsf	SEG:seg	:	:

Description

Autophagy-related protein [Source:UniProtKB/TrEMBL;Acc:F1JYZ5]

Coordinates

chr7:+:66721179..66724183

Molecular Weight (calculated)

13745.7 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.361

Length

119 amino acids

Sequence
(BLAST)

001: MAKSSFKLEH PLERRQAEAA RIREKYPDRI PVIVEKAERS DIPDIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFIF VKNILPPTAA MMSAIYEEHK
101: DEDGFLYMTY SGENTFGSF

Best Arabidopsis Sequence Match ( AT1G62040.1 )
(BLAST)

001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV

Arabidopsis Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.