Factsheet for Solyc08g078820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012239	Potato	cytosol	60.61	98.36
Solyc08g007400.2.1	Tomato	cytosol	55.56	92.44
Bra040738.1-P	Field mustard	cytosol	54.04	90.68
CDY68526	Canola	cytosol	54.04	90.68
CDY40540	Canola	cytosol	54.04	89.92
KRH77376	Soybean	cytosol	55.56	89.43
Bra012710.1-P	Field mustard	cytosol	53.03	88.24
KRH04111	Soybean	cytosol	56.57	87.5
KRH57384	Soybean	cytosol	58.59	86.57
VIT_02s0154g00390.t01	Wine grape	cytosol	56.06	85.38
Solyc07g064680.2.1	Tomato	plastid	50.51	84.03
CDX95634	Canola	cytosol	51.52	83.61
Bra038481.1-P	Field mustard	cytosol, mitochondrion	34.34	82.93
Bra000376.1-P	Field mustard	cytosol	51.01	82.79
CDX83397	Canola	cytosol	51.01	82.79
AT3G60640.1	Thale cress	cytosol	50.0	81.82
CDY56249	Canola	cytosol	50.0	81.15
Bra003310.1-P	Field mustard	cytosol	49.49	80.33
AT2G45170.1	Thale cress	cytosol	48.48	78.69
CDY32262	Canola	cytosol	47.98	77.87
Solyc02g080590.2.1	Tomato	cytosol	47.47	76.42
Solyc03g031650.2.1	Tomato	cytosol	47.47	76.42
KRH28060	Soybean	cytosol	56.06	72.08
GSMUA_Achr8P11170_001	Banana	cytosol	44.44	70.97
AT4G16520.3	Thale cress	extracellular	42.42	69.42
Solyc10g006270.2.1	Tomato	cytosol	51.01	68.71
CDX90515	Canola	plastid	62.12	67.21
CDY09685	Canola	plastid	62.12	66.49
CDY37030	Canola	cytosol	27.78	65.48
GSMUA_Achr11P...	Banana	cytosol	37.37	59.68
Solyc01g068060.2.1	Tomato	cytosol	27.27	45.38
CDY50852	Canola	cytosol	61.11	42.31

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:Atg8-like	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016020
GO:GO:0016021	UniProt:K4CNP1	PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	SUPFAM:SSF54236
EnsemblPlantsGene:Solyc08g078820.2	EnsemblPlants:Solyc08g078820.2.1	TMHMM:TMhelix	UniParc:UPI000276AEFA	InterPro:Ubiquitin-like_domsf	SEG:seg

Description

Autophagy-related protein [Source:UniProtKB/TrEMBL;Acc:K4CNP1]

Coordinates

chr8:+:62531047..62536300

Molecular Weight (calculated)

22873.1 Da

IEP (calculated)

9.930

GRAVY (calculated)

-0.132

Length

198 amino acids

Sequence
(BLAST)

001: MRDIIVDVPT ILGYSPRLPI LACIKYRLKI KRVLDNDYFI HKRVLNQSKS KVVNYSTFIL YLLFLSIDHH IITKGKMAKS SFKQEHDLEK RRAEAARIRE
101: KYADRIPVIV EKAEKSDIPN IDKKKYLVPA DLTVGQFVYV IRKRIKLSAE KAIFIFIDNV LPPTGAIMSA IYDEKKDDDG FLYVTYSGEN TFGVLSEL

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.