Factsheet for Bra040738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68526	Canola	cytosol	100.0	100.0
Bra012710.1-P	Field mustard	cytosol	93.22	92.44
Solyc08g007400.2.1	Tomato	cytosol	89.83	89.08
KRH77376	Soybean	cytosol	90.68	86.99
PGSC0003DMT400032488	Potato	cytosol	89.83	86.89
PGSC0003DMT400012239	Potato	cytosol	89.83	86.89
Bra038481.1-P	Field mustard	cytosol, mitochondrion	59.32	85.37
KRH04111	Soybean	cytosol	91.53	84.38
VIT_15s0048g00660.t01	Wine grape	cytosol	88.14	83.87
Bra000376.1-P	Field mustard	cytosol	85.59	82.79
VIT_02s0154g00390.t01	Wine grape	cytosol	90.68	82.31
Bra013172.1-P	Field mustard	cytosol	82.2	81.51
Bra003310.1-P	Field mustard	cytosol	83.9	81.15
KRH57384	Soybean	cytosol	91.53	80.6
Bra029509.1-P	Field mustard	cytosol	77.97	76.67
Bra019407.1-P	Field mustard	cytosol	79.66	75.81
Bra021303.1-P	Field mustard	cytosol	52.54	74.7
Bra013578.1-P	Field mustard	cytosol	77.12	74.59
AT4G16520.3	Thale cress	extracellular	74.58	72.73
GSMUA_Achr8P11170_001	Banana	cytosol	73.73	70.16
KRH28060	Soybean	cytosol	91.53	70.13
GSMUA_Achr11P...	Banana	cytosol	63.56	60.48
Bra027227.1-P	Field mustard	cytosol	54.24	55.65
Solyc08g078820.2.1	Tomato	cytosol, plastid	90.68	54.04
Bra001197.1-P	Field mustard	cytosol	49.15	48.74
Bra020749.1-P	Field mustard	cytosol	47.46	47.06
CDY50852	Canola	cytosol	100.0	41.26

Protein Annotations

EnsemblPlants:Bra040738.1	EnsemblPlants:Bra040738.1-P	EnsemblPlantsGene:Bra040738	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	PFAM:PF02991
SUPFAM:SSF54236	UniParc:UPI000253E861	UniProt:M4FI09	MapMan:19.3.3.1	:	:

Description

AT4G16520 (E=8e-060) ATG8F | ATG8F (autophagy 8f); microtubule binding

Coordinates

chrScaffold000247:-:3573..4351

Molecular Weight (calculated)

13524.3 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.401

Length

118 amino acids

Sequence
(BLAST)

001: MAKSTFKQEH DLEKRSAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPTGA LMSAVYEEKK
101: EEDGFLYVTY SGENTFGY

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.