Factsheet for PGSC0003DMT400032488

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007400.2.1	Tomato	cytosol	95.08	97.48
PGSC0003DMT400012239	Potato	cytosol	91.8	91.8
KRH77376	Soybean	cytosol	91.8	91.06
KRH04111	Soybean	cytosol	94.26	89.84
Bra040738.1-P	Field mustard	cytosol	86.89	89.83
CDY68526	Canola	cytosol	86.89	89.83
CDY40540	Canola	cytosol	85.25	87.39
Bra012710.1-P	Field mustard	cytosol	83.61	85.71
VIT_02s0154g00390.t01	Wine grape	cytosol	90.98	85.38
PGSC0003DMT400057469	Potato	cytosol	82.79	84.87
PGSC0003DMT400037386	Potato	cytosol	82.79	84.87
KRH57384	Soybean	cytosol	92.62	84.33
Bra000376.1-P	Field mustard	cytosol	83.61	83.61
CDX83397	Canola	cytosol	83.61	83.61
CDX95634	Canola	cytosol	83.61	83.61
AT3G60640.1	Thale cress	cytosol	81.97	82.64
CDY56249	Canola	cytosol	81.97	81.97
Bra038481.1-P	Field mustard	cytosol, mitochondrion	54.92	81.71
Bra003310.1-P	Field mustard	cytosol	81.15	81.15
AT2G45170.1	Thale cress	cytosol	80.33	80.33
PGSC0003DMT400013025	Potato	cytosol	77.87	77.24
PGSC0003DMT400042494	Potato	cytosol	77.05	76.42
CDY32262	Canola	cytosol	75.41	75.41
GSMUA_Achr8P11170_001	Banana	cytosol	74.59	73.39
KRH28060	Soybean	cytosol	92.62	73.38
AT4G16520.3	Thale cress	extracellular	68.85	69.42
CDY37030	Canola	cytosol	45.9	66.67
GSMUA_Achr11P...	Banana	cytosol	62.3	61.29
CDX90515	Canola	plastid	85.25	56.83
CDY09685	Canola	plastid	85.25	56.22
PGSC0003DMT400013320	Potato	cytosol	46.72	47.9
CDY50852	Canola	cytosol	86.89	37.06

Protein Annotations

EntrezGene:102602207	EntrezGene:102603200	MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:Atg8-like	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	UniProt:M1AXH6	PFAM:PF02991	EnsemblPlantsGene:PGSC0003DMG402012477	PGSC:PGSC0003DMG402012477
EnsemblPlants:PGSC0003DMT400032488	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	SUPFAM:SSF54236	UniParc:UPI00029676EF	InterPro:Ubiquitin-like_domsf
RefSeq:XP_006358352.1	:	:	:	:	:

Description

Microtubule associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG402012477]

Coordinates

chr8:-:500558..503667

Molecular Weight (calculated)

14033.9 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.424

Length

122 amino acids

Sequence
(BLAST)

001: MAKSSFKQEH DLEKRRAEAS RIREKYTDRI PVIVEKAERS DIPNIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPTGA IMSSIYDEKK
101: DEDGFLYVTY SGENTFGDLN LV

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.