Factsheet for VIT_02s0154g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007400.2.1	Tomato	cytosol	85.38	93.28
VIT_15s0048g00660.t01	Wine grape	cytosol	87.69	91.94
KRH77376	Soybean	cytosol	86.15	91.06
PGSC0003DMT400032488	Potato	cytosol	85.38	90.98
PGSC0003DMT400012239	Potato	cytosol	85.38	90.98
Bra040738.1-P	Field mustard	cytosol	82.31	90.68
CDY68526	Canola	cytosol	82.31	90.68
KRH04111	Soybean	cytosol	87.69	89.06
CDY40540	Canola	cytosol	80.77	88.24
Bra012710.1-P	Field mustard	cytosol	78.46	85.71
KRH57384	Soybean	cytosol	87.69	85.07
VIT_19s0090g00580.t01	Wine grape	cytosol	77.69	84.87
Bra000376.1-P	Field mustard	cytosol	78.46	83.61
CDX83397	Canola	cytosol	78.46	83.61
CDY56249	Canola	cytosol	77.69	82.79
CDX95634	Canola	cytosol	77.69	82.79
Bra003310.1-P	Field mustard	cytosol	76.92	81.97
AT3G60640.1	Thale cress	cytosol	76.15	81.82
Bra038481.1-P	Field mustard	cytosol, mitochondrion	51.54	81.71
AT2G45170.1	Thale cress	cytosol	76.15	81.15
VIT_10s0116g01700.t01	Wine grape	cytosol	73.85	78.69
VIT_12s0059g00660.t01	Wine grape	cytosol	72.31	77.69
CDY32262	Canola	cytosol	71.54	76.23
GSMUA_Achr8P11170_001	Banana	cytosol	70.0	73.39
KRH28060	Soybean	cytosol	86.92	73.38
AT4G16520.3	Thale cress	extracellular	63.85	68.59
CDY37030	Canola	cytosol	42.31	65.48
GSMUA_Achr11P...	Banana	cytosol	59.23	62.1
CDX90515	Canola	plastid	81.54	57.92
CDY09685	Canola	plastid	81.54	57.3
Solyc08g078820.2.1	Tomato	cytosol, plastid	85.38	56.06
VIT_07s0005g02200.t01	Wine grape	cytosol	44.62	46.77
CDY50852	Canola	cytosol	84.62	38.46

Protein Annotations

EntrezGene:100260865	wikigene:100260865	MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:Atg8-like	ProteinID:CCB56512
ProteinID:CCB56512.1	UniProt:F6HPA6	EMBL:FN596001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	EntrezGene:LOC100260865
wikigene:LOC100260865	PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	SUPFAM:SSF54236	TIGR:TC55886
UniParc:UPI0002108557	InterPro:Ubiquitin-like_domsf	ArrayExpress:VIT_02s0154g00390	EnsemblPlantsGene:VIT_02s0154g00390	EnsemblPlants:VIT_02s0154g00390.t01	unigene:Vvi.1161
RefSeq:XP_002270997	RefSeq:XP_002270997.1	SEG:seg	:	:	:

Description

Autophagy-related protein [Source:UniProtKB/TrEMBL;Acc:F6HPA6]

Coordinates

chr2:-:5185122..5188907

Molecular Weight (calculated)

14942.0 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.404

Length

130 amino acids

Sequence
(BLAST)

001: MIFADEGGMA KSYFKQEHDF EKRRAEAARI REKYPDRIPV IVEKAERSDI PNIDKKKYLV PADLTVGQFV YVIRKRIKLS AEKAIFIFVD NVLPPTGAIM
101: SGIYDEKKDA DGFLYVTYSG ENTFGYEIPH

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.