CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04111	Soybean	cytosol	94.03	98.44
KRH77376	Soybean	cytosol	87.31	95.12
Solyc08g007400.2.1	Tomato	cytosol	82.84	93.28
PGSC0003DMT400032488	Potato	cytosol	84.33	92.62
Bra040738.1-P	Field mustard	cytosol	80.6	91.53
CDY68526	Canola	cytosol	80.6	91.53
PGSC0003DMT400012239	Potato	cytosol	82.09	90.16
CDY40540	Canola	cytosol	79.1	89.08
VIT_02s0154g00390.t01	Wine grape	cytosol	85.07	87.69
Bra012710.1-P	Field mustard	cytosol	76.87	86.55
Bra038481.1-P	Field mustard	cytosol, mitochondrion	50.75	82.93
Bra000376.1-P	Field mustard	cytosol	74.63	81.97
CDX83397	Canola	cytosol	74.63	81.97
AT3G60640.1	Thale cress	cytosol	73.88	81.82
CDY56249	Canola	cytosol	73.88	81.15
CDX95634	Canola	cytosol	73.88	81.15
KRH25368	Soybean	cytosol	72.39	80.83
KRH36460	Soybean	cytosol, mitochondrion	71.64	80.67
KRH11438	Soybean	cytosol, mitochondrion	71.64	80.67
Bra003310.1-P	Field mustard	cytosol	73.13	80.33
KRH56143	Soybean	cytosol	71.64	80.0
AT2G45170.1	Thale cress	cytosol	72.39	79.51
CDY32262	Canola	cytosol	70.9	77.87
KRH28060	Soybean	cytosol	88.06	76.62
KRH51096	Soybean	cytosol	71.64	74.42
KRH02062	Soybean	cytosol	70.9	73.64
GSMUA_Achr8P11170_001	Banana	cytosol	67.16	72.58
KRH12706	Soybean	cytosol	38.06	69.86
AT4G16520.3	Thale cress	extracellular	61.94	68.59
CDY37030	Canola	cytosol	40.3	64.29
GSMUA_Achr11P...	Banana	cytosol	56.72	61.29
Solyc08g078820.2.1	Tomato	cytosol, plastid	86.57	58.59
CDX90515	Canola	plastid	79.85	58.47
CDY09685	Canola	plastid	80.6	58.38
KRH69161	Soybean	cytosol	44.78	49.18
KRH31741	Soybean	cytosol	44.03	48.36
CDY50852	Canola	cytosol	82.84	38.81

Protein Annotations

EntrezGene:100818620	MapMan:19.3.3.1	Gene3D:3.10.20.90	EMBL:ACUP02002830	InterPro:Atg8-like	EnsemblPlantsGene:GLYMA_05G058300
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0006950
GO:GO:0006995	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605
GO:GO:0009987	GO:GO:0009991	UniProt:I1K0N9	EnsemblPlants:KRH57384	ProteinID:KRH57384	ProteinID:KRH57384.1
PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF31	SUPFAM:SSF54236	UniParc:UPI00023C4CBF	InterPro:Ubiquitin-like_domsf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:5404576..5407116

Molecular Weight (calculated)

15526.8 Da

IEP (calculated)

8.730

GRAVY (calculated)

-0.336

Length

134 amino acids

Sequence
(BLAST)

001: MIDFYLMLIP GRMTKSYFKQ EHDLEKRRAE AARIREKYPD RIPVIVEKAE RSDIPSIDKK KYLVPADLTV GQFVYVIRKR IKLSAEKAIF IFVDNVLPPT
101: GAIMSAIYDE KKDEDGFLYV TYSGENTFGD LTSH

Best Arabidopsis Sequence Match ( AT1G62040.1 )
(BLAST)

001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV

Arabidopsis Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.